| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,619,759 – 1,619,850 |
| Length | 91 |
| Max. P | 0.524951 |
| Location | 1,619,759 – 1,619,850 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.24 |
| Mean single sequence MFE | -24.34 |
| Consensus MFE | -22.64 |
| Energy contribution | -22.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.93 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1619759 91 + 22407834 UGCUGGAAAUGCAAGAAAAGCGAAAACAUUUUCCCCGGCCCACGGC-------UUUCUUUUUGUUGGCAUUUUCCGCCUUCGGCUGUUUUUCGCCUUU .((.((((((((..((((((.((((....)))).(((.....))).-------...))))))....)))))))).))....(((........)))... ( -22.70) >DroEre_CAF1 99891 98 + 1 UGCUGGAAAUGCAAGAAAAGCGAAAACAUUUUCCCCGGCCCACGGCCCACGGGCUUCUUUUUGUUGGCAUUUUCCGCCUUCGGCUCUUUUUCGCCUCU .((.((((((((......((((((((......(((.((((...))))...)))....)))))))).)))))))).))....(((........)))... ( -28.30) >DroYak_CAF1 98772 91 + 1 CGCUGGAAAUGCAAGAAAAGCGAAAACAUUUUCCCCGGCCCACGGC-------UUUCUUAUUGUUGGCAUUUCUCGCCUUCGGCUGUUUUUCGCCUCU .((.((((((((((((((.((((((....))))..((.....))))-------)))))).......)))))))).))....(((........)))... ( -22.01) >consensus UGCUGGAAAUGCAAGAAAAGCGAAAACAUUUUCCCCGGCCCACGGC_______UUUCUUUUUGUUGGCAUUUUCCGCCUUCGGCUGUUUUUCGCCUCU .((.((((((((..((((((.((((....)))).(((.....)))...........))))))....)))))))).))....(((........)))... (-22.64 = -22.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:28 2006