Locus 5309

Sequence ID 2L_DroMel_CAF1
Location 15,010,341 – 15,010,435
Length 94
Max. P 0.576190
window8438

overview

Window 8

Location 15,010,341 – 15,010,435
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 87.66
Mean single sequence MFE -19.60
Consensus MFE -14.40
Energy contribution -14.56
Covariance contribution 0.16
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.09
SVM RNA-class probability 0.576190
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15010341 94 - 22407834
AAUAAGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGGCAUGACAUUUGAAUUCAAUGAGUCUGCAUAGAAUUCGCAAGCAA--
.............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40)
>DroSec_CAF1 4463 94 - 1
AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUGUGCAUAGAAUUCGCAAGCAA--
.............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40)
>DroSim_CAF1 4494 94 - 1
AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUGUGCAUAGAAUUCGCAAGCAA--
.............((((....)))).((((((.(.......((((......)))).....((((((.(((......))).))))))))))))).-- ( -20.40)
>DroEre_CAF1 5376 87 - 1
AGCAGGCAUAAGAUUGCGGAAGUAACGGCCUGACUACCCAUUCAUAUUGACUUCA-------AUUCAAUGAAUCUGCAUAGAAUUU--AAGCAAAA
(((((((....(.((((....))))).))))).))...........(((.(((.(-------((((.(((......))).))))).--)))))).. ( -21.90)
>DroYak_CAF1 7062 94 - 1
AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCAUUCAUAUUGACUUGACAUUCGCAUUCAAUGAAUCUGCAUAGAAUUCCCAAGCAA--
.............((((....)))).((((((.(((..((.......))..)))......(.((((.(((......))).)))).).)))))).-- ( -14.90)
>consensus
AAUAGGCAUAAGAUUACGGAAGUAACUGCUUGACAACCCUUUCAUAUUGACAUGACAUUUGAAUUCAAUGAGUCUGCAUAGAAUUCGCAAGCAA__
..((((((...(.((((....)))))))))))............................((((((.(((......))).)))))).......... (-14.40 = -14.56 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:04 2006