| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,946,529 – 14,946,638 |
| Length | 109 |
| Max. P | 0.804299 |
| Location | 14,946,529 – 14,946,638 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.58 |
| Mean single sequence MFE | -33.44 |
| Consensus MFE | -20.35 |
| Energy contribution | -21.75 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14946529 109 - 22407834 AGAGUGCUGGUGCUUAUAAGGAUUUUUUGGACGCACUUACGGCUCGCAAAUAAAUUAAAAGUAAUUGUGUUCGGGGAGUCCUCAGUGUAAAUACGCUGCUCCAGCAGAG ....((((((.((.....(((((((((((((((((.((((....................)))).))))))))))))))))).(((((....))))))).))))))... ( -39.95) >DroSec_CAF1 41879 109 - 1 AGUAUGCUGGUGUUUAUAAGGAUUUCCUGCACGCACUUACGGCUCGCAAAUAAAUUAAAAGUAAUUGUGUUCGGGGAGUCGUCAGUGUAAAUACGCUGCUCCAGCAGAG ....((((((..........(((((((((.(((((.((((....................)))).))))).)))))))))(.((((((....))))))).))))))... ( -36.45) >DroEre_CAF1 54202 109 - 1 UGAGUGCUAGUGCUUAUAAGGAUUUCCAGCACGCAUUUACGGUUCGCAAAUAAAUUAAAAGUAAUUGUGUUUGGGGAGUCCUCAGUGUAAAUACGCUGCGCCAGCAGAG ....((((.((((.....(((((((((...(((((.((((....................)))).)))))...))))))))).(((((....))))))))).))))... ( -35.05) >DroYak_CAF1 51845 109 - 1 AGAGUGCUAGUGCUUAUAAGGAUUUCCGGCACGCAUAUACGACUCAAAAAUAAAUUAAAAGUAAUUGUGUUCGGGGAGUCCUCAGUGUAAAUACGUUGCUCCAGCAGAG .(((((...(((.((((((((((((((.(.(((((..(((....................)))..))))).).)))))))))...))))).)))..)))))........ ( -27.85) >DroAna_CAF1 51295 101 - 1 AGC------GUUUUUAAAAGGAUUUCCGGCACGCGUUUGAGGCGCGCAAAUAAAUUAAAAGUAAUUGUGUUCA--GAGUCCUCUGAGCCAAUAUGGAGCGCCAGCCGAG .((------..........((....))(((.(((((.....))))).................((((.(((((--((....))))))))))).......))).)).... ( -27.90) >consensus AGAGUGCUAGUGCUUAUAAGGAUUUCCGGCACGCAUUUACGGCUCGCAAAUAAAUUAAAAGUAAUUGUGUUCGGGGAGUCCUCAGUGUAAAUACGCUGCUCCAGCAGAG .........(((.((((((((((((((.(.(((((.((((....................)))).))))).).)))))))))...))))).))).((((....)))).. (-20.35 = -21.75 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:53 2006