Locus 530

Sequence ID 2L_DroMel_CAF1
Location 1,619,564 – 1,619,659
Length 95
Max. P 0.795185
window847 window848

overview

Window 7

Location 1,619,564 – 1,619,659
Length 95
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 78.16
Mean single sequence MFE -32.90
Consensus MFE -21.89
Energy contribution -21.23
Covariance contribution -0.66
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.67
SVM decision value 0.60
SVM RNA-class probability 0.795185
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1619564 95 + 22407834
CGGUUGCUCUAUGUGGCACAUACUAUGUAGCGCUGCGAGUAGGAGUUGUGGUACAUAGAAGUUUGGGUUCCUUGGUCCUCCAACUGCCAACU--------------UCC
.((((((((((((((.((((..((((...((...))..))))....)))).))))))))((((.(((..(....)..))).))))).)))))--------------... ( -29.40)
>DroEre_CAF1 99686 94 + 1
GGGUUGCUCUAUGUGGCACAUGCCACAUAGAACGGG-AGCAGGAGUUGUGGUACAUAGAAGUUUGGGUUACUUGGUCCUCCAACUACCA--------------CUUUUC
..(((.(((((((((((....))))))))))...).-)))..(((..((((((((........))......((((....)))).)))))--------------)..))) ( -29.50)
>DroYak_CAF1 98558 109 + 1
GGGUUGCUCUAUGUGCCACAUGCCACAUAGCUCAGGCAGCAGGAGUUGUGGUACAUAGAAGUUUGGGUUACUUGGCCCUCCAACUGCCAACUGCCUACACCCACUUUUC
((((.(((((((((((((((..((.....((....))....))...)))))))))))).))).(((((...(((((.........)))))..))))).))))....... ( -39.80)
>consensus
GGGUUGCUCUAUGUGGCACAUGCCACAUAGCACAGG_AGCAGGAGUUGUGGUACAUAGAAGUUUGGGUUACUUGGUCCUCCAACUGCCAACU___________CUUUUC
.(((...((((((((.((((..((.................))...)))).))))))))((((.(((........)))...)))))))..................... (-21.89 = -21.23 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 1,619,564 – 1,619,659
Length 95
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -32.19
Consensus MFE -17.66
Energy contribution -19.00
Covariance contribution 1.34
Combinations/Pair 1.08
Mean z-score -2.30
Structure conservation index 0.55
SVM decision value 0.41
SVM RNA-class probability 0.723785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1619564 95 - 22407834
GGA--------------AGUUGGCAGUUGGAGGACCAAGGAACCCAAACUUCUAUGUACCACAACUCCUACUCGCAGCGCUACAUAGUAUGUGCCACAUAGAGCAACCG
((.--------------(((.((.(((((..((..((.((((.......)))).))..)).))))))).)))....(((((((...))).))))............)). ( -20.50)
>DroEre_CAF1 99686 94 - 1
GAAAAG--------------UGGUAGUUGGAGGACCAAGUAACCCAAACUUCUAUGUACCACAACUCCUGCU-CCCGUUCUAUGUGGCAUGUGCCACAUAGAGCAACCC
.....(--------------(((((..((((((...............))))))..))))))..........-...((((((((((((....))))))))))))..... ( -34.66)
>DroYak_CAF1 98558 109 - 1
GAAAAGUGGGUGUAGGCAGUUGGCAGUUGGAGGGCCAAGUAACCCAAACUUCUAUGUACCACAACUCCUGCUGCCUGAGCUAUGUGGCAUGUGGCACAUAGAGCAACCC
.......((((..(((((((.((.(((((..(((........)))..((......))....))))))).)))))))(..(((((((.(....).)))))))..).)))) ( -41.40)
>consensus
GAAAAG___________AGUUGGCAGUUGGAGGACCAAGUAACCCAAACUUCUAUGUACCACAACUCCUGCU_CCAGAGCUAUGUGGCAUGUGCCACAUAGAGCAACCC
.....................((.(((((..((..((((............)).))..)).)))))))........((.(((((((((....))))))))).))..... (-17.66 = -19.00 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:27 2006