Locus 53

Sequence ID 2L_DroMel_CAF1
Location 214,555 – 214,675
Length 120
Max. P 0.654449
window76

overview

Window 6

Location 214,555 – 214,675
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -47.32
Consensus MFE -25.09
Energy contribution -26.10
Covariance contribution 1.01
Combinations/Pair 1.31
Mean z-score -2.07
Structure conservation index 0.53
SVM decision value 0.25
SVM RNA-class probability 0.654449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 214555 120 - 22407834
AGCUGCACUGGAUCAAGCUGCCUUACAAUUUGGCUCCUUAGCGGGUCUGAAUCCCAGUCUGUUAGCAAAUCUUCCUGGACUGGGCGCAUUUGAUCCCAAGAAUCCUCUUGCUGCAUUUGA
...((((..((((((((.(((......(((..(..((.....))..)..)))(((((((((..((.....))..).)))))))).)))))))))))(((((....))))).))))..... ( -37.20)
>DroPse_CAF1 8265 120 - 1
GGCUGCCUUGGAUCAGGCGGCGUUGCAGUUCAGCUCGCUGGCAGGGCUCAAUCCCAGUCUGUUGGCCAAUCUGCCGGGACUGGGAGGCUUCGAUCCGAAGAAUCCCCUGGCGGCCUUUGA
((((((((((((((.(.(((((..((......)).))))).).(((((...(((((((((..((((......)))))))))))))))))).)))))))((......)))))))))..... ( -58.10)
>DroGri_CAF1 7900 120 - 1
UGCUGCCUUGGAUCAGGCCGCAUUGCAGUUUGGCUCGCUGGCCGGGCUGAGUCCCAGUUUGUUGGCCAGUCUGCCCGGACUGGGUGCAUUCGAUCCGAAGAAUCCGUUGGCCGCCUUCGA
.((.(((.((((((.....(((((.(((((((((..(((((((((((((.....))))...)))))))))..).))))))))))))).((((...))))).)))))..))).))...... ( -48.60)
>DroWil_CAF1 8545 116 - 1
----GCCUUGGAUCAAGCAGCAUUGCAAUUUGGAUCCCUAGCAGGACUGAAUCCCAGUCUCUUGGCCAAUUUACCUGGCUUGGGUGCUUUCGAUCCAAAGAAUCCACUUGCGGCCUUCGA
----(((.((((((..((......))..((((((((...((((((((((.....))))))((.(((((.......))))).)).))))...))))))))).))))).....)))...... ( -38.50)
>DroAna_CAF1 9819 120 - 1
UGCCGCCUUGGAUCAGGCUGCUCUGCAAUUCGGCUCUCUGGCCGGCCUGAAUCCCAACCUGCUGGCCAACCUGCCCGGACUAGGAGCAUUCGAUCCAAAGAAUCCACUGGCUGCCUUUGA
.((.((((((((((.(..((((((....((((((....((((((((..(........)..))))))))....).)))))...))))))..))))))))((......))))).))...... ( -44.50)
>DroPer_CAF1 8399 120 - 1
GGCUGCCUUGGAUCAGGCGGCGUUGCAGUUCAGCUCGCUGGCAGGGCUCAAUCCCAGUCUGUUGGCCAAUCUGCCGGGACUGGGAGGCUUCGAUCCGAAAAAUCCCCUGGCGGCCUUUGA
((((((((((((((.(.(((((..((......)).))))).).(((((...(((((((((..((((......)))))))))))))))))).)))))))..........)))))))..... ( -57.00)
>consensus
GGCUGCCUUGGAUCAGGCGGCAUUGCAAUUCGGCUCGCUGGCAGGGCUGAAUCCCAGUCUGUUGGCCAAUCUGCCCGGACUGGGAGCAUUCGAUCCGAAGAAUCCACUGGCGGCCUUUGA
.((.((((((((((.((.(((......((((((.((.......)).))))))((((((((...(((......))).)))))))).))).)))))))))..........))).))...... (-25.09 = -26.10 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:23 2006