Locus 5289

Sequence ID 2L_DroMel_CAF1
Location 14,903,114 – 14,903,229
Length 115
Max. P 0.778159
window8413

overview

Window 3

Location 14,903,114 – 14,903,229
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.66
Mean single sequence MFE -26.36
Consensus MFE -19.48
Energy contribution -19.52
Covariance contribution 0.04
Combinations/Pair 1.20
Mean z-score -2.01
Structure conservation index 0.74
SVM decision value 0.55
SVM RNA-class probability 0.778159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14903114 115 - 22407834
GGAGGU-UCAGCCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C
.((((.-..(((((((....))))(((((--.(((((..................(....)....-..(....)))))).)))))......................)))))))....-. ( -28.60)
>DroSec_CAF1 60860 115 - 1
GGAGGU-UCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C
.((((.-.((..((((....))))(((((--.(((((..................(....)....-..(....)))))).))))).....................))..))))....-. ( -28.40)
>DroSim_CAF1 63559 115 - 1
GGAGGU-GCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C
.((((.-(((..((((....))))(((((--.(((((..................(....)....-..(....)))))).))))).....................))).))))....-. ( -32.40)
>DroWil_CAF1 238944 120 - 1
GAAUUUUGUUACCCAUCUCAGUGGCUGGUCAAGAGUAACCACAAUACCCAACACCCGCAAGACAAAACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUUCCCCUUCUG
((((((((((...(((....)))((.(((...(.(((.......))).)...))).))..))))))).(((.........))).................)))................. ( -12.30)
>DroYak_CAF1 60368 115 - 1
GGAGCU-UCAACCCGUUCCUGCGGUUCGC--AUGGCAACCACAAUUCCCAACACCCGCAAGACAA-ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC-C
(((((.-.....((((....))))(((((--.(((((..................(....)....-..(....)))))).)))))......................)))))......-. ( -30.10)
>consensus
GGAGGU_UCAACCCGUUCCUGCGGUUCGC__AUGGCAACCACAAUUCCCAACACCCGCAAGACAA_ACCGCAAGUGCCAAGCGAAAAAACUACUUAAAAUUUCAUAUGCUCCUCGUCC_C
((((........((((....))))(((((...(((((..................(....).......(....)))))).))))).......................))))........ (-19.48 = -19.52 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:38 2006