Locus 5288

Sequence ID 2L_DroMel_CAF1
Location 14,901,959 – 14,902,054
Length 95
Max. P 0.545563
window8412

overview

Window 2

Location 14,901,959 – 14,902,054
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 97.89
Mean single sequence MFE -24.80
Consensus MFE -24.89
Energy contribution -24.70
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 1.00
SVM decision value 0.02
SVM RNA-class probability 0.545563
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14901959 95 - 22407834
CGGUAAUCAUAAAUUACUGGACGGGGACAAAGCUCGUCCUUGGCAGUGGCUAAAUUUAAUAGGCAUCGUUAUAAAUGGCAAAAGUGACAGCCUGA
.(((..((((....(((((..(((((((.......))))))).)))))((((....((((.......))))....))))....))))..)))... ( -24.40)
>DroSec_CAF1 59536 95 - 1
UGGUAAUCAUAAAUUACUGGACGGGGACAAAGCUCGUCCUUGGCAGUGGCUAAAUUUAAUAGGCAUCGUUAUAAAUGGCAAAAGUGACAGCCUGA
.((((((.....))))))(((((((.......)))))))(((((....)))))......(((((...(((((...........))))).))))). ( -24.30)
>DroSim_CAF1 62416 95 - 1
UGGUAAUCAUAAAUUACUGGACGGGGACAAAGCUCGUCCUUGGCAGUGGCUAAAUUUAAUAGGCAUCGUUAUAAAUGGCAAAAGUGACAGCCUGA
.((((((.....))))))(((((((.......)))))))(((((....)))))......(((((...(((((...........))))).))))). ( -24.30)
>DroYak_CAF1 59208 95 - 1
UGGUAAUCAUAACUUACUGGACGGGGACAAAGCUCGUCCUUGACAGUGGCCAAAUUUAAUAGGCAUCGUUAUAAAUGGCAAAAGUGACAGCCUGA
.(((..((((....(((((..(((((((.......))))))).)))))((((....((((.......))))....))))....))))..)))... ( -26.20)
>consensus
UGGUAAUCAUAAAUUACUGGACGGGGACAAAGCUCGUCCUUGGCAGUGGCUAAAUUUAAUAGGCAUCGUUAUAAAUGGCAAAAGUGACAGCCUGA
.(((..((((....(((((..(((((((.......))))))).)))))((((....((((.......))))....))))....))))..)))... (-24.89 = -24.70 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:37 2006