| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,612,287 – 1,612,378 |
| Length | 91 |
| Max. P | 0.563939 |
| Location | 1,612,287 – 1,612,378 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 91.43 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.24 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1612287 91 - 22407834 GCGACUUUGCGUCGUUUUUCGAGUAUUUCCGCUUCGAGAAGUUCGUUUUUCAGGCGCAUAUUGCGCAGCUCCACCUUUCGCUGCUCCAGCU ((((...((((((......((((..((((......))))..)))).......))))))..))))(((((..........)))))....... ( -26.52) >DroSec_CAF1 90609 91 - 1 CCGACUUUACGUCGUUUUUCGAGUAUUUCCGCUUCGAGAAGUUCGUUUUUCAGGCGCAUAUUCCGCAGCUCCACCUUUCGCUGCUCCAGCU .((((.....))))......((((((...(((((.((((((....))))))))))).)))))).(((((..........)))))....... ( -23.00) >DroSim_CAF1 93393 91 - 1 CCGACUUUACGUUGUUUUUCGAGUAUUUCCGCUUCGAGAAGUUCGUUUUUCAGGCGCAUAUUCCCCAGCUCCACCUUUCGCUGCUCCAGCU ..........((((......((((((...(((((.((((((....))))))))))).))))))..((((..........))))...)))). ( -18.10) >DroEre_CAF1 92474 91 - 1 CCGACUUUUGGUCGUUUUACCAGAAUUUCCGCUUCGAGAAGUUCGCUUUUAAGGCGCAUAUUUCGCAGCUCCACCUUGCGCUGCUCCAGCU .....(((((((......))))))).....(((..((((.((.((((.....)))).)).))))(((((.(......).)))))...))). ( -23.20) >DroYak_CAF1 91165 91 - 1 CCGACUUUUCGUCGCUUUUCCACAAUUUCCGCUUCGAGAAGUUCGCUUUUAAGGCGCAUAUUUCGCAGCUCCACCUUGCGCUGCUCCAGUU ..(((((((((..((...............))..)))))))))((((.....))))........(((((.(......).)))))....... ( -21.86) >consensus CCGACUUUACGUCGUUUUUCGAGUAUUUCCGCUUCGAGAAGUUCGUUUUUCAGGCGCAUAUUCCGCAGCUCCACCUUUCGCUGCUCCAGCU .((((.....))))...............(((((.((((((....)))))))))))........(((((..........)))))....... (-17.04 = -17.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:24 2006