| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,881,047 – 14,881,144 |
| Length | 97 |
| Max. P | 0.723031 |
| Location | 14,881,047 – 14,881,144 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -17.22 |
| Energy contribution | -17.00 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.723031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14881047 97 - 22407834 CAUGUGAUGACG--------UGAUGCCCUUUGGCCUAUAGCCAAAUUUGUCAACAUGAUUUGGAUGAAAAUCAUUUCGUUUUC-CGUCGCUCACGUUUUGCGA-CUU ..((..(.((((--------(((.((..((((((.....))))))...........(((..((((((((....))))))))..-.)))))))))))))..)).-... ( -25.70) >DroPse_CAF1 91197 97 - 1 AAUGGGAUG-UG--------UGCGCCUCCUUGGCCUACAGUCGAAUUUGUCAACAUGAUUUGUAAGGAAUUCAAUUCGUAUUCUCAUCGCCUUUUUUGUGGGA-UUU .((((((..-((--------((.(((.....))).))))...((((((.(..(((.....))).).)))))).........))))))..(((.......))).-... ( -19.40) >DroSec_CAF1 39265 98 - 1 CAUGUGAUGACG--------UGAUGUCCUUUGGCCUAUAGCCAAAUUUGUCAACAUGAUUUGGAUGAAAAUCAUUUCGUCUUC-CGUCGCUCACGUUUUGGAAACCU .(((((((((((--------(((((...((((((.....))))))..))))).........((((((((....))))))))..-))))).))))))...(....).. ( -27.40) >DroSim_CAF1 38822 98 - 1 CAUGUGAUGACG--------UGAUGUCCCUUGGCCUAUAGCCAAAUUUGUCAACAUGAUUUGGAUGAAAAACAUUUCGUCUUC-CGUCGCUCACGUUUUGGAAACUU .(((((((((((--------(((((....(((((.....)))))...))))).........((((((((....))))))))..-))))).))))))...(....).. ( -26.50) >DroEre_CAF1 38688 90 - 1 CAUGUGACGACG--------UGAUGCCUUUUGGCCUACAGCCGAAUUUGUCAACAUGGCUUGGAUGAAAAUCAUUUCGUCUGU-CGUUCCUUGCGUCUU-------- ((.(..(((((.--------....(((.((((((.....))))))..((....)).)))..((((((((....))))))))))-)))..).))......-------- ( -24.40) >DroYak_CAF1 38588 105 - 1 CGUGUGAUGACGCGAUGACAUGAUGCCUUUUGGCCUACAGCCGAAUUUGUCGGCAUGAUUUGGAUGAAAAUCAUUUCGUCUUC-CGUUCCUAACGUUUUGCAG-CUU (((.....((((.((.(((.....(((....))).....(((((.....)))))(((((((......)))))))...))).))-))))....)))........-... ( -26.70) >consensus CAUGUGAUGACG________UGAUGCCCUUUGGCCUACAGCCAAAUUUGUCAACAUGAUUUGGAUGAAAAUCAUUUCGUCUUC_CGUCGCUCACGUUUUGGAA_CUU .(((((((((((........(((((...((((((.....))))))..))))).........((((((((....))))))))...))))).))))))........... (-17.22 = -17.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:20 2006