Locus 5267

Sequence ID 2L_DroMel_CAF1
Location 14,861,338 – 14,861,440
Length 102
Max. P 0.795315
window8383

overview

Window 3

Location 14,861,338 – 14,861,440
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.70
Mean single sequence MFE -16.69
Consensus MFE -9.95
Energy contribution -9.75
Covariance contribution -0.19
Combinations/Pair 1.20
Mean z-score -1.76
Structure conservation index 0.60
SVM decision value 0.60
SVM RNA-class probability 0.795315
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14861338 102 + 22407834
AGAAGCACCCACGAACACACAGCCACCCCCACACACCCACAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
.((((((.....(......).(((....................((((((........)))))).((((...............)))))))....)))))). ( -19.56)
>DroPse_CAF1 52084 99 + 1
ACACGCACCCAGCACCAU---UCCACCCACAAGCAGACACACAUACGUUGAUCAUACGCAGUGUUGUGCUUACAAAUUUCAAAUGCAUGGCACUUUAGUGCA
....((((((((((....---.........(((((.(.((((...(((.......)))..))))).)))))............))).))).......)))). ( -18.62)
>DroSec_CAF1 21272 92 + 1
AGAAACACCCACAAACACACAGCCACC--CA--------CAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
.....................(((...--..--------.....((((((........)))))).((((...............)))))))........... ( -13.46)
>DroSim_CAF1 20787 100 + 1
AGAAGCACCCACGAACACACAGCCACC--CACACAGCCACAUACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
.((((((.....(......).......--......(((......((((((........)))))).((((...............)))))))....)))))). ( -19.56)
>DroEre_CAF1 20491 77 + 1
-----CACACA------CACACCCA--------------CACACACGUUGAUCAUACGCAGUGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
-----......------........--------------..................(((((((..(((...............)))..))))..))).... ( -13.56)
>DroYak_CAF1 20351 81 + 1
AGAAGCACCCA------CACAGCCA--------------CACACACCCACA-CACACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
.((((((....------....((..--------------............-.....))((.((..(((...............)))..)).)).)))))). ( -15.37)
>consensus
AGAAGCACCCAC_AACACACAGCCACC__CA________CACACACGUUGAUCAUACGCAGCGUUGUGCUUAAAAAUUUCAAAUGCAUGGCACUUUGCUUCA
.........................................................(.((((..(((((..................)))))..)))).). ( -9.95 =  -9.75 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:08 2006