Locus 5264

Sequence ID 2L_DroMel_CAF1
Location 14,852,025 – 14,852,130
Length 105
Max. P 0.999900
window8379

overview

Window 9

Location 14,852,025 – 14,852,130
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 97.02
Mean single sequence MFE -36.18
Consensus MFE -34.08
Energy contribution -33.97
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.85
Structure conservation index 0.94
SVM decision value 4.45
SVM RNA-class probability 0.999900
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14852025 105 - 22407834
UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60)
>DroSec_CAF1 12168 105 - 1
UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60)
>DroSim_CAF1 11508 105 - 1
UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))(((.(((.((....((....))((....)))).)))..))).....))).))))))))). ( -36.60)
>DroEre_CAF1 10786 105 - 1
UUCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUUCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))(((.(((......(((....)))(((....))).))).))).....))).))))))))). ( -35.40)
>DroYak_CAF1 11196 105 - 1
UUCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUGCGAAAUUUCGGACCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))...........(((((((...(((....))).....)))))))...))).))))))))). ( -36.10)
>DroAna_CAF1 10652 104 - 1
UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACA-UGGACGUUUUCAAAAUUUCGGGCCACCGCCUCCUUUUCCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).))))).(-((((((............))(((....)))......)))))..))).))))))))). ( -35.80)
>consensus
UCCUCGCACUAGUUGCAGGCAUCGCGUGUCUCUAAUGACCCGCGACAAUGGACGCUUACGAAAUUUCGGGCCACCGCCUCCUUUUGCAUAUUGCACUGCAGCUGA
.........(((((((((((((((((.(((......))).)))))....(((.((....((....))((....)))).)))..........))).))))))))). (-34.08 = -33.97 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:04 2006