Locus 5261

Sequence ID 2L_DroMel_CAF1
Location 14,838,924 – 14,839,020
Length 96
Max. P 0.521099
window8375

overview

Window 5

Location 14,838,924 – 14,839,020
Length 96
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 74.19
Mean single sequence MFE -12.97
Consensus MFE -5.88
Energy contribution -6.12
Covariance contribution 0.25
Combinations/Pair 1.33
Mean z-score -2.14
Structure conservation index 0.45
SVM decision value -0.02
SVM RNA-class probability 0.521099
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14838924 96 - 22407834
-----UUUUUUCCCCAUCCUAUAAUUUGGGAAAUGAUACUCUUUUUUGUGGUCAGAUUAGAUCCUAUCACUACUACAUUAAUUUUUUUCUUUUUAACGGUA
-----........((.(((((.....)))))..(((((.(((..((((....))))..)))...)))))............................)).. ( -13.20)
>DroSec_CAF1 80768 90 - 1
-----CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACCAC------UUUUUUCUUUUUAACGGUA
-----........((.(((((.....)))))................(((((..(((........)))...)))))------...............)).. ( -13.20)
>DroSim_CAF1 81975 90 - 1
-----CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACUAC------UUUUUUCUUUUUAACGGUA
-----........((.(((((.....)))))..................((((......)))).............------...............)).. ( -11.30)
>DroEre_CAF1 76135 92 - 1
UUUUACCUUUACCCCAUUCAACAACUUUAGGGACUAUACCCUUUUUCACUGUC---------CCUAAGACAACUUUACCAGUAUUUUUCUUUUUAGCGGUA
...((((..................(((((((((................)))---------))))))...(((.....)))...............)))) ( -14.19)
>consensus
_____CCUUUCCCCCAUCCUAUAAUUUGGGAAAUUAUACUCUUUUUUGUGGUCAGAUUAGACCCUAUCACUACUAC______UUUUUUCUUUUUAACGGUA
.............((.(((((.....)))))................(((((..(((........)))...))))).....................)).. ( -5.88 =  -6.12 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:01 2006