Locus 5260

Sequence ID 2L_DroMel_CAF1
Location 14,837,839 – 14,837,930
Length 91
Max. P 0.633679
window8374

overview

Window 4

Location 14,837,839 – 14,837,930
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -23.14
Consensus MFE -11.26
Energy contribution -12.57
Covariance contribution 1.31
Combinations/Pair 1.22
Mean z-score -2.24
Structure conservation index 0.49
SVM decision value 0.21
SVM RNA-class probability 0.633679
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14837839 91 - 22407834
AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUUCAGGAUCCCAAAA------CUAAUCACCAAUUAGGGAUGGCAUA
..((((.((((..(..(((.....((((((....))).)))....)))..)..))))(((((....------..............))))).)))). ( -24.97)
>DroSec_CAF1 79690 91 - 1
AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUGCAGGAUCCAAAAA------CUAAUCACCAAUUAGGGAUGGCAUA
..(((((((((((((((((.....((((((....))).))).....))....))))))).......------(((((.....))))))))).)))). ( -25.10)
>DroSim_CAF1 80896 91 - 1
AAAUGCAUCUGACUUGCCCAAAAACCCGCAGACAUGCAGGGAAAAGGGAGAUGCAGUAUCCAAAAA------CUAAUCACCAAUUAGGGAUGGCAUA
...(((((((......(((.....((((((....))).)))....))))))))))((((((.....------(((((.....))))))))).))... ( -23.20)
>DroEre_CAF1 74960 89 - 1
AAAUGCAUCUGAGUUGGCCAAAAACCCGCAGACAUGCGGG-GAAAGGGUGAUUCGGGAUCCGAAA-------CUAAUCACCAAUUAGGGAUGGCAUA
..((((.(((((((((.((.....((((((....))))))-....)).)))))))))((((....-------(((((.....))))))))).)))). ( -31.50)
>DroYak_CAF1 77050 96 - 1
AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCUGG-AAAAGGGAGAUUCGGGAUCCAAAAACUACGAGUAAUCACCUAUUAGCGAUGGCAUA
..((((((((((((.((..........))))))).(((((-...(((((.(((((..............)))))..)).))).)))))))).)))). ( -21.94)
>DroAna_CAF1 74279 75 - 1
AAACGAAUUUGUCUUGGCCGC--ACCCGAAUA------GG-AAAA----GACACAGGAUC-AGAAA------CUAAUCGUUACUUAGAUAUGGUA--
.(((((...((((((..((..--.........------))-..))----)))).((....-.....------))..)))))..............-- ( -12.10)
>consensus
AAAUGCAUCUGUCUUGCCCAAAAACCCGCAGACAUGCAGG_AAAAGGGAGAUUCAGGAUCCAAAAA______CUAAUCACCAAUUAGGGAUGGCAUA
..((((.((((..((.(((.....((.(((....))).)).....))).))..))))..................(((.((.....))))).)))). (-11.26 = -12.57 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:00 2006