Locus 526

Sequence ID 2L_DroMel_CAF1
Location 1,608,601 – 1,608,693
Length 92
Max. P 0.991869
window840 window841

overview

Window 0

Location 1,608,601 – 1,608,693
Length 92
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 76.19
Mean single sequence MFE -35.92
Consensus MFE -25.10
Energy contribution -23.88
Covariance contribution -1.22
Combinations/Pair 1.22
Mean z-score -3.62
Structure conservation index 0.70
SVM decision value 2.29
SVM RNA-class probability 0.991869
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1608601 92 + 22407834
GUUGACAGUUAACAAUAUUUAGUGCCCGUGGGCGGGAC-----UCC-----CGCUGG-----GAGCC-AUAACAA-GUCCAUGUCUGGCACUAGAUACUUAGUGCAGUA
(((((...)))))..((((((((((((((((((.((.(-----(((-----(...))-----)))))-.......-)))))))...)))))))))))............ ( -34.10)
>DroVir_CAF1 129117 100 + 1
GUUGACAGUUAACAAUAUUUAGUGCCCGUGAGCAGGAU-----UUGGGCCCCACAAAGGCCAAAUCC----ACAACGCUCAUGCCUGGCACUAAAUACUUAGUACAUUA
(((((...)))))..((((((((((((((((((.((((-----((((.((.......))))))))))----.....)))))))...)))))))))))............ ( -37.40)
>DroPse_CAF1 135311 96 + 1
GUUGACAGUUAACAAUAUUUAGUGCCCCUGGGCGGGAU-----CUCU---UCGCGGA-----GAACCAAUAACAACGCCCAGGUCUGGCACUGAAUACUUAGUGAAGUA
(((((...)))))..(((((((((((((((((((((.(-----((((---....)))-----)).))........))))))))...)))))))))))............ ( -37.60)
>DroEre_CAF1 88781 91 + 1
GUUGACAGUUAACAAUAUUUAGUGCCCGUGGGCCGGAU-----UCC-----G-CUGG-----GAGCC-ACAACAA-GUCCAUGUCUGGCACUAGAUACUUAGUGCAGUA
(((((...)))))..((((((((((((((((((.((.(-----(((-----.-...)-----)))))-.......-)))))))...)))))))))))............ ( -27.90)
>DroAna_CAF1 117163 103 + 1
GUUGACAGUUAACAAUAUUUAGUGCCCGUGGGCAGGAGCUGGCCCC-----AUCCCGGGCCAGUUUC-ACAACAACGCCCAUGUGAGGCACUAAAUACUUAGAGAUGUA
....(((.((((...((((((((((((((((((.(((((((((((.-----.....)))))))))))-........)))))))...))))))))))).))))...))). ( -45.50)
>DroPer_CAF1 139808 96 + 1
GUUGACAGUUAACAAUAUUUAGUGCCCCUGGGCGGGAU-----CUCU---UCGCGGA-----GAACCAAUAACAACGCCCCGGUCUGGCACUGAAUACUUAGUGAAGUA
(((((...)))))..(((((((((((((.(((((((.(-----((((---....)))-----)).))........))))).))...)))))))))))............ ( -33.00)
>consensus
GUUGACAGUUAACAAUAUUUAGUGCCCGUGGGCGGGAU_____CCC_____CGCGGA_____GAACC_AUAACAACGCCCAUGUCUGGCACUAAAUACUUAGUGAAGUA
(((((...)))))..((((((((((((((((((...........................................)))))))...)))))))))))............ (-25.10 = -23.88 +  -1.22)

alignment

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secondary structure

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dotplot

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Window 1

Location 1,608,601 – 1,608,693
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.19
Mean single sequence MFE -33.00
Consensus MFE -17.98
Energy contribution -19.10
Covariance contribution 1.11
Combinations/Pair 1.11
Mean z-score -2.76
Structure conservation index 0.54
SVM decision value 2.26
SVM RNA-class probability 0.991321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1608601 92 - 22407834
UACUGCACUAAGUAUCUAGUGCCAGACAUGGAC-UUGUUAU-GGCUC-----CCAGCG-----GGA-----GUCCCGCCCACGGGCACUAAAUAUUGUUAACUGUCAAC
....((((((......))))))..((((..(((-.((((..-(((((-----((...)-----)))-----)))..(((....)))....))))..)))...))))... ( -29.90)
>DroVir_CAF1 129117 100 - 1
UAAUGUACUAAGUAUUUAGUGCCAGGCAUGAGCGUUGU----GGAUUUGGCCUUUGUGGGGCCCAA-----AUCCUGCUCACGGGCACUAAAUAUUGUUAACUGUCAAC
....((....(((((((((((((.....((((((....----(((((((((((.....))).))))-----))))))))))..)))))))))))))....))....... ( -39.40)
>DroPse_CAF1 135311 96 - 1
UACUUCACUAAGUAUUCAGUGCCAGACCUGGGCGUUGUUAUUGGUUC-----UCCGCGA---AGAG-----AUCCCGCCCAGGGGCACUAAAUAUUGUUAACUGUCAAC
..........((((((.((((((...((((((((........((.((-----((.....---.)))-----).)))))))))))))))).))))))............. ( -34.00)
>DroEre_CAF1 88781 91 - 1
UACUGCACUAAGUAUCUAGUGCCAGACAUGGAC-UUGUUGU-GGCUC-----CCAG-C-----GGA-----AUCCGGCCCACGGGCACUAAAUAUUGUUAACUGUCAAC
....((((((......))))))..((((((((.-((((((.-(....-----))))-)-----)).-----.))))(((....)))................))))... ( -24.70)
>DroAna_CAF1 117163 103 - 1
UACAUCUCUAAGUAUUUAGUGCCUCACAUGGGCGUUGUUGU-GAAACUGGCCCGGGAU-----GGGGCCAGCUCCUGCCCACGGGCACUAAAUAUUGUUAACUGUCAAC
.(((......((((((((((((((....((((((.....(.-((..(((((((.....-----.))))))).))))))))).))))))))))))))......))).... ( -40.60)
>DroPer_CAF1 139808 96 - 1
UACUUCACUAAGUAUUCAGUGCCAGACCGGGGCGUUGUUAUUGGUUC-----UCCGCGA---AGAG-----AUCCCGCCCAGGGGCACUAAAUAUUGUUAACUGUCAAC
..........((((((.((((((...((.(((((........((.((-----((.....---.)))-----).))))))).)))))))).))))))............. ( -29.40)
>consensus
UACUGCACUAAGUAUUUAGUGCCAGACAUGGGCGUUGUUAU_GGAUC_____CCAGCG_____GAA_____AUCCCGCCCACGGGCACUAAAUAUUGUUAACUGUCAAC
..........(((((((((((((.....((((((.........................................))))))..)))))))))))))............. (-17.98 = -19.10 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:21 2006