Locus 5259

Sequence ID 2L_DroMel_CAF1
Location 14,834,072 – 14,834,167
Length 95
Max. P 0.781775
window8373

overview

Window 3

Location 14,834,072 – 14,834,167
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 94.18
Mean single sequence MFE -26.98
Consensus MFE -22.98
Energy contribution -23.65
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.85
SVM decision value 0.56
SVM RNA-class probability 0.781775
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14834072 95 + 22407834
ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
.........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50)
>DroSec_CAF1 75996 89 + 1
ACACACA-AUGGAAU--AUCCGUGCGUC-UGCAA--CGAUGCAUGACAGACAGGAGACGAAGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
.......-((((...--..))))(((((-((((.--...)))).))).....((((.((.....)).)))).)).(((.((((....)))).))) ( -24.90)
>DroSim_CAF1 77111 95 + 1
ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAAGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
.........((((.(..((((((((((((.......))))))))).......(....)...)))..).))))...(((.((((....)))).))) ( -26.60)
>DroEre_CAF1 71391 95 + 1
ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
.........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50)
>DroYak_CAF1 73367 95 + 1
ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
.........((((.(..((((((((((((.......))))))))........(....)..))))..).))))...(((.((((....)))).))) ( -28.50)
>DroAna_CAF1 70614 95 + 1
ACACACAAAUAGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGUCGAGGUGGAGCUGCAGCCGCUAACUUCAAGAAGUAAGC
...(((..............(((((((((.......)))))))))...(((....)))...)))(.((....)))(((.((((....)))).))) ( -24.90)
>consensus
ACACACAAAUGGAAUUAUUCCGUGCGUCCUGCAAACGGAUGCAUGACAGACAGGAGACGAGGAGCGGCUCCAGCAGCUAACUUCAAGAAGUAAGC
........(((((.....)))))(((((.((((......)))).))).....((((.((.....)).)))).)).(((.((((....)))).))) (-22.98 = -23.65 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:59 2006