Locus 5258

Sequence ID 2L_DroMel_CAF1
Location 14,826,116 – 14,826,211
Length 95
Max. P 0.779665
window8372

overview

Window 2

Location 14,826,116 – 14,826,211
Length 95
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 73.76
Mean single sequence MFE -25.16
Consensus MFE -9.87
Energy contribution -10.95
Covariance contribution 1.08
Combinations/Pair 1.11
Mean z-score -1.88
Structure conservation index 0.39
SVM decision value 0.55
SVM RNA-class probability 0.779665
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14826116 95 + 22407834
CCAUUCUGUAAGCCAUGGCUACUGCUGGUAUCACU----------GAUUG------AAAAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC
.((((((((..((((..((....)))))).(((((----------.....------.....)))))......)))))))).(((((((....)))))))............ ( -25.30)
>DroSec_CAF1 68015 95 + 1
ACAUUCUAUAUGCCAUGGCUACAGUUGGUAUCACU----------GAUUG------GACAGAGUGAGCACGAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC
.((((((....((....))..((((..(.....).----------.))))------...))))))..........((((..(((((((....)))))))...))))..... ( -26.90)
>DroEre_CAF1 63183 87 + 1
--------AAAGCCAAAGCUGCAGUUGGUAUCACU----------GAUUG------GACAGAAUGAGCAAAAACGGAGUGGAGUGGAGAAAACUCUACUCAAACUCGACUC
--------...((((...(((((((..(.....).----------.))))------..)))..)).)).......((((.((((((((....))))))))..))))..... ( -26.00)
>DroYak_CAF1 64943 95 + 1
ACAUUCUGUAAGCUAUAGCUACAGUGGGUAUCACU----------GAUUG------GACAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC
.((((((((.(((....))).(((((.....))))----------)....------.))))))))..........((((..(((((((....)))))))...))))..... ( -31.50)
>DroAna_CAF1 63749 100 + 1
-----------CCUAUAGCUAUAUUUCGUAUCACUAGAGAACCGUGCUUGCUGAGAGAAAGAGAGAACUCAAACGGAUGGGAGCGGAGAAAACUUAACUCAUACCCACCUC
-----------............((((...(((...(((.......)))..)))..))))(((....)))....((.((((....(((.........)))...)))))).. ( -16.10)
>consensus
_CAUUCU_UAAGCCAUAGCUACAGUUGGUAUCACU__________GAUUG______GACAGAGUGAGCAAAAACGGAGUGAAGUGGAGAAAACUCUACUCAAACUCGACUC
...........................((.(((((..........................))))))).......((((..(((((((....)))))))...))))..... ( -9.87 = -10.95 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:58 2006