Locus 5257

Sequence ID 2L_DroMel_CAF1
Location 14,820,779 – 14,820,885
Length 106
Max. P 0.619339
window8371

overview

Window 1

Location 14,820,779 – 14,820,885
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 97.94
Mean single sequence MFE -23.88
Consensus MFE -22.10
Energy contribution -21.98
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.26
Structure conservation index 0.93
SVM decision value 0.18
SVM RNA-class probability 0.619339
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14820779 106 - 22407834
AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGUUGAUGCAAGAGC
..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...))))....-)))))).)))))))..... ( -23.50)
>DroSec_CAF1 62282 107 - 1
AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUUUUUUGAGUUGAUGCAAGAGC
..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... ( -22.90)
>DroSim_CAF1 62853 107 - 1
AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUUUUUUGAGUUGAUGCAAGAGC
..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... ( -22.90)
>DroEre_CAF1 57939 106 - 1
AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGCUGGUGCAAGAGC
..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...))))....-)))))).)))))))..... ( -22.50)
>DroYak_CAF1 59575 106 - 1
AAUGCGAAACUUUUUUAAUAUGCAAAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU-UUUGAGUGGAUGCAAGAGC
..((((.((((((((........))))))))....((((((((((...((((....(((..(((.....))).)))...))))....-))))))))))))))..... ( -27.60)
>consensus
AAUGCGAAACUUUUUUAAUAUGCAGAAAGUUAAAUUUCAUUUAAAUCAAGACUGCUGCAGACGCUUAAUGCGAUGCUUUGUCUGUUU_UUUGAGUUGAUGCAAGAGC
..((((.((((((((........)))))))).....(((((((((...((((....(((..(((.....))).)))...)))).....)))))).)))))))..... (-22.10 = -21.98 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:57 2006