Locus 5255

Sequence ID 2L_DroMel_CAF1
Location 14,817,065 – 14,817,168
Length 103
Max. P 0.995017
window8369

overview

Window 9

Location 14,817,065 – 14,817,168
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -23.33
Consensus MFE -23.57
Energy contribution -23.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 1.01
SVM decision value 2.53
SVM RNA-class probability 0.995017
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14817065 103 - 22407834
UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
.......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60)
>DroSec_CAF1 58558 103 - 1
UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUAUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
.......-----------------..........(((((...((((((((.((((((..(((.(((..((....))..))).)))..)))))).))).(....).)))))...))))).. ( -21.80)
>DroSim_CAF1 59136 103 - 1
UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
.......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60)
>DroEre_CAF1 54331 120 - 1
UUUCAUUUUUUCAAUUUUUCAAUUUUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
..................................(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60)
>DroYak_CAF1 56002 103 - 1
UUUCAAU-----------------UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
.......-----------------..........(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. ( -24.60)
>DroAna_CAF1 54161 102 - 1
UUU-ACU-----------------UUUUUCCCCCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUCCCGUUUACAAUUGCAUUUGCAGUUCUGUUUUCUGUUUGCGUGGUCAAU
...-...-----------------..........(((((...(((((((.(((((((..(((.(((..((....))..))).)))..))))))).)).(....).)))))...))))).. ( -19.80)
>consensus
UUUCAAU_________________UUUUUCCCUCUGGCUUGUCAAACGAUUUGCAAAACCAACUGUCGGCUGCCGUUAACAAUUGCAUUUGCAGGUCUGUUUUCUGUUUGCGUGGUCAAU
..................................(((((...(((((((((((((((..(((.(((..((....))..))).)))..)))))))))).(....).)))))...))))).. (-23.57 = -23.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:55 2006