Locus 523

Sequence ID 2L_DroMel_CAF1
Location 1,596,277 – 1,596,375
Length 98
Max. P 0.890538
window837

overview

Window 7

Location 1,596,277 – 1,596,375
Length 98
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 75.24
Mean single sequence MFE -30.93
Consensus MFE -18.40
Energy contribution -18.10
Covariance contribution -0.30
Combinations/Pair 1.28
Mean z-score -1.77
Structure conservation index 0.59
SVM decision value 0.96
SVM RNA-class probability 0.890538
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1596277 98 - 22407834
AAACUACAGAUGCUUAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------CGAGGGAAUGGUGGGAAAAGCUAGUUCCGA
....(((.(((((((.(((....))).)))))))..)))...((((..((.....)).---........))---------)).((((.((((.......)))).)))).. ( -24.60)
>DroPse_CAF1 121257 98 - 1
AAGCUGCAAAUGCUCAACGUCUGCGUGGAGCGUCGCGUGCAGCGGGAGGCAAACAGCA---AACGCAAACAGCACCAGGACCAGGCACUG---------GCCAUAUCCGA
..((((((.((((((.(((....))).))))))....)))))).((((((.....((.---...))...(((..((.......))..)))---------)))...))).. ( -34.80)
>DroEre_CAF1 76343 98 - 1
AAACUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------CGAGGGAAUGGUGCGAAAAGCUAGUGCCGA
...((((.(((((((.(((....))).))))))).((.....))))))((.....)).---........((---------(...))).(((..(.........)..))). ( -30.30)
>DroYak_CAF1 74935 98 - 1
AAGCUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCGAAUAGCA---AAAGAAAAUC---------UGAGGGACUGGUGGGAAAAGCCAGUGCCGA
...((((.(((((((.(((....))).))))))).((.....))))))((.....)).---..........---------...((.((((((.......)))))).)).. ( -36.70)
>DroAna_CAF1 105342 95 - 1
AAACUCCAGAUGCUGAAUGUUUGUGUGGAGCGUCGCGUGCAACAAGAGGCAAUUGGCAAGAAAAGAAAAUC---------CGAGGGA------GGGAAACCCAGUUCCCA
.....((((.((((...((((.(..(((.....).))..)))))...)))).))))...............---------...((((------((....))....)))). ( -24.40)
>DroPer_CAF1 123932 98 - 1
AAGCUGCAAAUGCUCAACGUCUGCGUGGAGCGUCGCGUGCAGCGGGAGGCAAACAGCA---AACGCAAACAGCACCAGGACCAGGCACUG---------GCCAUAUCCGA
..((((((.((((((.(((....))).))))))....)))))).((((((.....((.---...))...(((..((.......))..)))---------)))...))).. ( -34.80)
>consensus
AAACUCCAGAUGCUCAACGUUUGCGUGGAGCGUCGCGUGCAACGGGAGGCAAAUAGCA___AAAGAAAAUC_________CGAGGGACUG___GGAAAAGCCAGUUCCGA
....(((.(((((((.(((....))).)))))))((.(((........)))....))...........................)))....................... (-18.40 = -18.10 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:17 2006