Locus 5225

Sequence ID 2L_DroMel_CAF1
Location 14,766,000 – 14,766,096
Length 96
Max. P 0.919100
window8317

overview

Window 7

Location 14,766,000 – 14,766,096
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 87.94
Mean single sequence MFE -24.92
Consensus MFE -21.16
Energy contribution -21.83
Covariance contribution 0.67
Combinations/Pair 1.17
Mean z-score -2.38
Structure conservation index 0.85
SVM decision value 1.13
SVM RNA-class probability 0.919100
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14766000 96 - 22407834
CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU
.((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -29.30)
>DroSec_CAF1 12492 96 - 1
CGCUGGCAAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU
.(((((((..((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))...))))))).. ( -30.40)
>DroSim_CAF1 8229 96 - 1
CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU
.((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -29.30)
>DroEre_CAF1 6980 83 - 1
-GCUGGCUAGCUGAGGGACAUUAAUAUUUAUUAACAUGUGGUGCAUGAUUAAUGCAUAGUAAUAAAAUUAGUUAAAGCCUCGAG------------
-...((((((((((.....((((.(((.((((((((((.....)))).)))))).))).))))....))))))..)))).....------------ ( -18.30)
>DroYak_CAF1 9708 96 - 1
CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCAUAGUAAUGAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU
.((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. ( -27.90)
>DroAna_CAF1 7375 89 - 1
AGCUGGCUGGCCGAGAGACAUUAAUAUUUAUUAACACGCGGUGCAUGAUUAAUGCUUUAUAAUAAAAUUAGUUAAAGCUU-GGGAUCUGC------
.........((((...(...(((((....)))))..).))))(((.((((...((((((.............))))))..-..)))))))------ ( -14.32)
>consensus
CGCUGGCUAGCUGAAGGACAUUAAUAUUUAUUAACAUGCGGUGCAUGAUUAAUGCACAGUAAUAAAAUUAGUUAAAGCCUCGAGAACUGCCGGCAU
.((((((...((..(((..((((((.(((((((.......((((((.....))))))..))))))))))))).....)))..))....)))))).. (-21.16 = -21.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:05 2006