Locus 522

Sequence ID 2L_DroMel_CAF1
Location 1,590,552 – 1,590,652
Length 100
Max. P 0.614116
window836

overview

Window 6

Location 1,590,552 – 1,590,652
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 92.23
Mean single sequence MFE -25.92
Consensus MFE -22.91
Energy contribution -23.30
Covariance contribution 0.39
Combinations/Pair 1.12
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.16
SVM RNA-class probability 0.614116
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1590552 100 + 22407834
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AUCU
.....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10)
>DroSec_CAF1 68966 100 + 1
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AACU
.....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10)
>DroSim_CAF1 71361 100 + 1
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA-AACU
.....((((....((((((......))))))((((..(((.....)))...))))(((....(((((........)))))...)))....))))..-.... ( -26.10)
>DroEre_CAF1 70545 100 + 1
ACAGCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGCCUCUGGUAAAAUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCGAAUGGCAA-AGCU
...(((((.....((((((......))))))((((..((((...))))...)))).....)))))....((((((.((........))))))))..-.... ( -29.00)
>DroYak_CAF1 69335 100 + 1
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGCCUCUGGUAAAAUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCCA-AACU
.....((((....((((((......))))))((((..((((...))))...))))(((....(((((........)))))...)))....))))..-.... ( -25.60)
>DroAna_CAF1 99564 93 + 1
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGGGUCUC--------GCAGUAAGGUGCGUUCGACGUUACGCAAAAACCAAAAUGGCAAAAACU
.....((((..((((((((......)))))((((.....))))..--------)))....(((((((........))))....)))....))))....... ( -22.60)
>consensus
ACAUCGCCAAAUGCAUUUCCUAUUAGAGAUGGCCAAGUGUCUCUGGCAAACUGGCAGUAAGGUGCGUUCGUCGUUACGCAAAAACUCAAAUGGCAA_AACU
.....((((....((((((......))))))((((..((((...))))...))))(((....(((((........)))))...)))....))))....... (-22.91 = -23.30 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006