Locus 5217

Sequence ID 2L_DroMel_CAF1
Location 14,745,202 – 14,745,321
Length 119
Max. P 0.859298
window8307

overview

Window 7

Location 14,745,202 – 14,745,321
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.71
Mean single sequence MFE -24.20
Consensus MFE -20.98
Energy contribution -21.15
Covariance contribution 0.17
Combinations/Pair 1.06
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 0.82
SVM RNA-class probability 0.859298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14745202 119 - 22407834
UGGUGUGCUGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA
..(((((((((.(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...))).............)))))))))......... ( -27.50)
>DroVir_CAF1 20539 119 - 1
GUGUGUGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA
((((((((....(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...)))..((((......))))))))))))....... ( -27.10)
>DroPse_CAF1 25139 120 - 1
CUGUCCGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAGCCGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA
(((.(((((((.((.....)).))))))))))...(((..((((((((...((.....(((((....))))).))))))))))..)))...((((......))))............... ( -18.50)
>DroYak_CAF1 10690 119 - 1
CGGUGUGCUGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA
..(((((((((.(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...))).............)))))))))......... ( -27.50)
>DroAna_CAF1 29916 119 - 1
CUGUGUGCAGAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG-CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACGCACUUUUUGA
.(((((((....(((((((....))))))).(((......(((((((..(-((.....(((((....))))).))))))))))...)))..((((......)))))))))))........ ( -25.70)
>DroPer_CAF1 24838 120 - 1
CUGUCCGUAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAGGCGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA
(((.(((((((.((.....)).))))))))))...(((..(((((((...(((.....(((((....))))).))))))))))..)))...((((......))))............... ( -18.90)
>consensus
CUGUGUGCAAAAGUUAUAAACAUUUAUGGCAGCUACUUAAAAAUGUCAAG_CGAAAAAAUUAUGAUAAUGAUACGUGACAUUUGAAAGCAAUAACAAUUUAGUUAGCACACACUUUUUGA
..((((((....(((((((....))))))).(((......((((((((...((.....(((((....))))).))))))))))...)))..((((......))))))))))......... (-20.98 = -21.15 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:55 2006