Locus 5212

Sequence ID 2L_DroMel_CAF1
Location 14,738,976 – 14,739,070
Length 94
Max. P 0.551291
window8298

overview

Window 8

Location 14,738,976 – 14,739,070
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 88.48
Mean single sequence MFE -22.03
Consensus MFE -15.74
Energy contribution -17.43
Covariance contribution 1.69
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.551291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14738976 94 + 22407834
AGAAAUCAGCUCUGUUAAUGCAGUGCUAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAAUAAUCACAGCUUGGGGUAUAUAGAUUUCGAU
.(((((((((.((((....)))).)))..........(((((((..((.......................)).)))))))....))))))... ( -22.80)
>DroSec_CAF1 3262 94 + 1
AGAAAUCAGCGCUGUUAAUGCAGUGCCAUAAUUGUGCUACCUCAUCGCAGACGCUUAAUCUAUUAACCACAGCUUGGGGUAUAUAGAUUUCGAU
.((((((.(((((((....)))))))......((((.(((((((..((.......................)).)))))))))))))))))... ( -26.10)
>DroSim_CAF1 3156 94 + 1
AGAAAUCAGCGCUGUUAAUGCAGUGCCAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAUUAACCACAGCUUGGGGUAUAUAGAUUUCGAU
.((((((.(((((((....)))))))...........(((((((..((.......................)).)))))))....))))))... ( -24.80)
>DroYak_CAF1 3834 92 + 1
AGAAAUCAGCACGUUUAGU--AUUACUUAAAUUCUGCCACCUCAUCGCAGACGCCUAAUCUAAUAACCACAGCGUGGGGUAUAUAUAUUUUGAU
....(((((((.((((((.--.....))))))..))).((((((.(((.......................)))))))))..........)))) ( -14.40)
>consensus
AGAAAUCAGCGCUGUUAAUGCAGUGCCAGAAUUUUGCUACCUCAUCGCAGACGCUUAAUCUAAUAACCACAGCUUGGGGUAUAUAGAUUUCGAU
.((((((.(((((((....)))))))...........(((((((..((.......................)).)))))))....))))))... (-15.74 = -17.43 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:47 2006