Locus 5201

Sequence ID 2L_DroMel_CAF1
Location 14,714,525 – 14,714,632
Length 107
Max. P 0.740454
window8278

overview

Window 8

Location 14,714,525 – 14,714,632
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.61
Mean single sequence MFE -32.02
Consensus MFE -16.42
Energy contribution -16.87
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -3.16
Structure conservation index 0.51
SVM decision value 0.45
SVM RNA-class probability 0.740454
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14714525 107 - 22407834
GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACGAAGUCAUUGCUGAAU-----UCACAUCCAAAUA
((((((.---(((((...(-((((...-.....((((((.......)))))).)))))..)))))(((((((.........---.)))))))......))))-----))........... ( -31.00)
>DroPse_CAF1 98833 119 - 1
GAGUUUUCUGGCGAUUUUUCGGCUUAAAAACUUUUCCCAUAACAAUUGGCCAUGGCCAUCGUCGCGACUUUGCGACAAACCUAAACAUUGCCAUCUCUUAACAGAGGGGAGAGCGAAAU-
..(((((((((((((.(((.((........................((((....))))..((((((....))))))...)).))).)))))).(((((....)))))))))))).....- ( -36.30)
>DroSec_CAF1 71581 107 - 1
GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACGAAGCCAUUACUGAUU-----UCACAUCCAAAUA
..(((((---(((((...(-((((...-.....((((((.......)))))).)))))..)))))))....))).......---..(((..((....))..)-----))........... ( -26.40)
>DroEre_CAF1 71141 104 - 1
GAGUUUU---GCGAUUUUU-GGCUUAA-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---ACAAAGCCAUUGCUGAAU-----UCACAUCCAA---
(((((((---(((((...(-((((...-.....((((((.......)))))).)))))..))))))...............---....(((....)))))))-----))........--- ( -27.80)
>DroYak_CAF1 70616 107 - 1
GAGUUUU---GCGAUUUUU-GGCUUAC-AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC---GCGAAGCCAUUGCUGAAU-----UCACAUCCAAAUA
((((((.---((((....(-((((...-..((.((((((.......)))))).))......(((((.(((((...))))))---))))))))))))).))))-----))........... ( -34.30)
>DroPer_CAF1 99008 119 - 1
GAGUUUUCUGGCGAUUUUUCGGCUUAAAAACUUUUCCCAUAACAAUUGGCCAUGGCCAUCGUCGCGACUUUGCGACAAACCUAAACAUUGCCAUCUCUUAACAGAGGGGAGAGCGAAAU-
..(((((((((((((.(((.((........................((((....))))..((((((....))))))...)).))).)))))).(((((....)))))))))))).....- ( -36.30)
>consensus
GAGUUUU___GCGAUUUUU_GGCUUAA_AACUUUGGCCAUAACAAUUGGCCAUGGCCAUCAUCGCGAUUUUGACACAAAAC___ACAAAGCCAUUGCUGAAU_____UCACAUCCAAAU_
..........(((((.....((((.........((((((.......)))))).))))...)))))....................................................... (-16.42 = -16.87 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:28 2006