Locus 5198

Sequence ID 2L_DroMel_CAF1
Location 14,710,182 – 14,710,288
Length 106
Max. P 0.614899
window8271

overview

Window 1

Location 14,710,182 – 14,710,288
Length 106
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 76.56
Mean single sequence MFE -23.45
Consensus MFE -12.48
Energy contribution -12.44
Covariance contribution -0.04
Combinations/Pair 1.35
Mean z-score -1.78
Structure conservation index 0.53
SVM decision value 0.17
SVM RNA-class probability 0.614899
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14710182 106 - 22407834
UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG--AAGGGCGGCGAAGUUUUCUUUAUUGCCUUUUGGCCCG--CUUUUUGCCCUCACCGCGUUUUUUU--UUUU--AUACUA
((((((((........(((....))).(((.(((--((((((((..(((....)))..)))))))))))...(--(.....)).......)))....)))--))))--)..... ( -24.00)
>DroSec_CAF1 66944 108 - 1
UAGAAAAGUUUCCCACUGCACUCGCAUCGCUCCG--AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUCGUCCG--CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU--AAACUA
((((((((........(((....))).(((..((--((((((((..(((....)))..))))).)))))...(--(.....)).......)))......)))))))--)..... ( -23.90)
>DroSim_CAF1 67168 108 - 1
UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG--AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGUCCG--CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU--AAACUA
((((((((........(((....))).(((.(((--((((((((..(((....)))..)))))))))))...(--(.....)).......)))......)))))))--)..... ( -26.50)
>DroYak_CAF1 66168 106 - 1
UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCUC-UGGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGCCCAUUUUUUU-UGCCUUACCAUGUUUU---U-UUUU--AUACUA
((((((((........(((....))).........-((((((((..(((....)))..)))))....(((..........-.)))...)))....))---)-))))--)..... ( -20.00)
>DroAna_CAF1 61415 106 - 1
UAGAAACUUUUUCC-CAGCAUUCGCCUCGCUUCUUUUUGGCCAGAGAAGUUUGCUUCGUCUACCGUUGGC------UUCU-UCCCUCUCUGCCAUCUUUAUUUUUCGAAUGCCG
..............-..(((((((.............((((.(((((((...(((.((.....))..)))------..))-....)))))))))...........))))))).. ( -22.85)
>consensus
UAGAAAAGUUUCCCACUGCACUCGCAUCGCUUCG__AAGGGCGGCGAAGUUUUCUUUACUGCCUUUUGGCCCG__CUUUUUGCCCUCACCGCGUUUUUUUUUUUUU__AUACUA
.................((....))...(((.....((((((((.((((....)))).)))))))).)))............................................ (-12.48 = -12.44 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:22 2006