| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,695,245 – 14,695,351 |
| Length | 106 |
| Max. P | 0.692340 |
| Location | 14,695,245 – 14,695,351 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -17.63 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.03 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14695245 106 + 22407834 AUGAAUCCCACAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAGAAU ..(((.(((((....))))).)))..............((((((....(((((.....-----..............)))))....))))))....--............... ( -18.91) >DroSec_CAF1 51383 105 + 1 AUGAAUC-CACAAACGUGGGUUUCCAACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACACCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAGAAA ..(((((-(((....))))))))...............((((((....(((((.....-----..............)))))....))))))....--............... ( -17.41) >DroSim_CAF1 51646 105 + 1 AUAAAUC-CACAAACGUGGGUUUCCAACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCGAAUAAAUACAGCAAAAACACAAACACA--AUUAAAAAUAAAAAA ..(((((-(((....))))))))...............((((((....(((((.....-----..............)))))....))))))....--............... ( -17.01) >DroEre_CAF1 51095 94 + 1 AUGAAUC-CGCAAACGUGGGUUU-----CAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCAAAUAAAUAAAGCAAA------AACACA--AUUAAAAACCAGAGA .((((((-(((....))))).))-----))((((.......))))...((((......-----...............))))..------......--............... ( -14.80) >DroYak_CAF1 49917 104 + 1 AUGAAUG-CGCAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG-----ACAUCA-AUAAAUAAAACAAAAACCAAAACACA--AUUAAAAACAACAGA .(((.((-((((((..((((((.......))).)))..)))))))).(((.....)))-----...)))-..........................--............... ( -15.40) >DroAna_CAF1 48775 104 + 1 AUGAAUA-CAUC-AUGUGGGCUU--UGCUAGCACCAUUUUUGUGCACCUGCUGGCCGGCGGACACAACCAAUAAAUGAAGCUAAAACACACACAUAGGAGUAACAAAA----- .....((-(..(-(((((.....--...((((..((((((((((...(((((....))))).))))).....)))))..)))).......))))).)..)))......----- ( -22.26) >consensus AUGAAUC_CACAAACGUGGGUUUCCUACCAGCACCAAUUUUGUGCACCUGCUGACCAG_____ACAUCGAAUAAAUAAAGCAAAAACACAAACACA__AUUAAAAAUAAGAAA ........(((....)))((((........((((.......)))).......))))......................................................... ( -9.66 = -9.03 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:17 2006