Locus 519

Sequence ID 2L_DroMel_CAF1
Location 1,584,981 – 1,585,101
Length 120
Max. P 0.578947
window825

overview

Window 5

Location 1,584,981 – 1,585,101
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.61
Mean single sequence MFE -51.08
Consensus MFE -40.35
Energy contribution -40.60
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -2.33
Structure conservation index 0.79
SVM decision value 0.09
SVM RNA-class probability 0.578947
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1584981 120 + 22407834
AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUUGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA
......(((((((..(((..((.((((((((.....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -54.00)
>DroSec_CAF1 63504 120 + 1
AGUCCCUCUUAUGUCCAACCGCUGGUCUUUUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA
......(((((((..(((..((.((((.((((....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -50.30)
>DroSim_CAF1 65811 120 + 1
AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGGCUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA
......(((((((..(((..((.((((((((.....)))).))))....))..((((...((((((.(((((((((........)))))))))...))))))..)))))))..))))))) ( -54.00)
>DroEre_CAF1 64973 120 + 1
AGUCUAUCCUAUGUCCAUCCGGUGUUCUUCUUGGAGAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA
......(((((((..((...(((((((((......)))))).)))........((((...((((((.(((((((((........)))))))))...))))))..)))).))..))))))) ( -51.00)
>DroYak_CAF1 63615 119 + 1
AGUCU-CCCUAUGUCCAUCCGCUGUUCUUCUUGGAGAGAAUGACCUUCUGCAUGUGCUCAUCCGCCGUGUGGGUGGUGUGACUGCCGCCCGCGUGACGCGGAGUGCACUUGACCAUAGGA
.....-.((((((..((...((.(((.(((((...))))).))).....))..((((...(((((((((((((((((......))))))))))))..)))))..)))).))..)))))). ( -46.90)
>DroAna_CAF1 94407 120 + 1
UGUGCUACCUAUUUCCAGCCAGUGUUCCUCUUGGAGAGAACCACCUUCUGCAUGUGGUCCUCGGCGGUGUGGGUGGUGUGGCUGCCACCGGCGUGCCGCGGUGUGCACUUCACCAUGGGU
...(((((((((..((.(((.....(((....)))(((.(((((.........))))).)))))))).)))))))))(((((((((...)))).)))))((((.......))))...... ( -50.30)
>consensus
AGUCCCUCCUAUGUCCAACCGCUGGUCUUCUUGGACAGAAUGACCUUCUGCAUGUGCUCAUCCGCGGUGUGGGUGGUGUGACUUCCGCCCGCGUGACGCGGAGUGCACUUGACCAUGGGA
......(((((((..((.......((((....))))((((.....))))....((((...((((((.(((((((((........)))))))))...))))))..)))).))..))))))) (-40.35 = -40.60 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006