| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,686,015 – 14,686,127 |
| Length | 112 |
| Max. P | 0.932489 |
| Location | 14,686,015 – 14,686,127 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 87.05 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -26.80 |
| Energy contribution | -28.30 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14686015 112 - 22407834 UGAAAUACCCUCUGAAAAGGCCGGAGGCCAACAGCACUUGACAGCCGUGAAAAAUGUCGCCUUUCGGUGAGAAUAGAUCUAGAAAUGA-UAGUACAGAGUGCAGGGGGUAU----GU ....(((((((((.....((((...))))....((((((.((............(.(((((....))))).)....(((.......))-).))...)))))))))))))))----.. ( -36.70) >DroSec_CAF1 40207 112 - 1 UGAAAUACCCUCUGAAAAGGCCGGAGGCCAACAGCACUUGACAGCCGUGAAAAAUGUCGCCUUUCGUUGAGAAUAGAUCUAGAAAUGA-UAGUACGGAGUGCAGGGGGUAU----GU ....(((((((((.....((((...))))....((((((((((....(....).))))..((.(((((.(((.....)))...)))))-.))....)))))))))))))))----.. ( -36.60) >DroEre_CAF1 42214 113 - 1 AGAAAUGCCCUCUGAAAAGGCCGGAGGCCAAUAGCACUUGACAGCCGUGAAAAAUGUCGCCUUUAGGAGAGAAUUCAUCUAGAAUUGUGGAGUGUGGUGUGCAGGGGGUAU----GC ....((((((((((....((((...))))....((((((.((((..((((......)))).(((((..(......)..))))).)))).))))))......))))))))))----.. ( -39.30) >DroYak_CAF1 40834 116 - 1 AGAAAUGCCCUCUAAAAAGGCCGCAGGCAAACAGCACUUGACAGCCGUGAAAAGUGUCGCCUUUGGGAUAGAAUUCAUCUAGAAAUGA-UAGUGUGGCGUGCAGGGGGUAUGAAUGU ....(((((((((....(.(((((((((.....((((((..((....))..)))))).)))(((.((((.(....))))).)))....-...)))))).)..)))))))))...... ( -33.80) >consensus AGAAAUACCCUCUGAAAAGGCCGGAGGCCAACAGCACUUGACAGCCGUGAAAAAUGUCGCCUUUCGGAGAGAAUACAUCUAGAAAUGA_UAGUACGGAGUGCAGGGGGUAU____GU ....(((((((((.....((((...))))....((((((.(((...((((......)))).........(((.....)))............))).)))))))))))))))...... (-26.80 = -28.30 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:11 2006