Locus 5185

Sequence ID 2L_DroMel_CAF1
Location 14,678,614 – 14,678,716
Length 102
Max. P 0.996423
window8256

overview

Window 6

Location 14,678,614 – 14,678,716
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 79.98
Mean single sequence MFE -22.80
Consensus MFE -15.10
Energy contribution -16.34
Covariance contribution 1.24
Combinations/Pair 1.19
Mean z-score -2.99
Structure conservation index 0.66
SVM decision value 2.70
SVM RNA-class probability 0.996423
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14678614 102 + 22407834
AAUUUCUCGAAGCGCAAAACAAUAAUCUAUAUAUCACCACAGUCUAUUUUGCAUAU---UUAUUAUUUAUGUGCAGAAUAGGAAGUGAACAUAUGGGUUCAUAUA
.......................(((((((((.((((.....((((((((((((((---.........))))))))))))))..))))..)))))))))...... ( -24.20)
>DroSec_CAF1 32946 88 + 1
A--------------AAAACAAAGAUCUAUAUAUCA---CAGUCUUUUUUGCAUUUAAAUUAUUAUUUGUGGGCGGAAAAGGAAGUGAACAUAUGGGUUGAUAUA
.--------------........(((((((((.(((---(..((((((((((...(((((....)))))...))))))))))..))))..)))))))))...... ( -24.60)
>DroSim_CAF1 35432 88 + 1
A--------------AAAACAAAGAUCUAUAUAUCA---CAAUCUGUUUUGCAUAUAAAUUAUUAUUUGUGUGCGGAAAAGGAAGUGAACAUAUGGGUUGAUAUA
.--------------........(((((((((.(((---(..(((.((((((((((((((....)))))))))))))).)))..))))..)))))))))...... ( -26.70)
>DroEre_CAF1 34900 99 + 1
AAUUUCUUGAAGCGCAAAACAAAGAUCUAUUUAUCA---CAGUCUGUUUUGCAUAU---UUAUUAUCUGUGUGCACAAUAGGAUGUGAGCAUAUUGGUUGAUAUA
.......................((((......(((---((..(((((.(((((((---.........))))))).)))))..))))).......))))...... ( -20.92)
>DroYak_CAF1 33470 99 + 1
AAUUUCUUGAAGCGCAAAACAAAGAUCUAUAUUUCA---CAGUCUGUUUUGCAUAU---UUAUUAUCUGUGUGCAUAAAAGGAAGUGAACAUACUGGUUGAUAUA
.......................((((..(((((((---(..(((....(((((((---.........)))))))....)))..))))).)))..))))...... ( -17.60)
>consensus
AAUUUCU_GAAGCGCAAAACAAAGAUCUAUAUAUCA___CAGUCUGUUUUGCAUAU___UUAUUAUUUGUGUGCAGAAAAGGAAGUGAACAUAUGGGUUGAUAUA
.......................(((((((((.(((......((((((((((((((............))))))))))))))...)))..)))))))))...... (-15.10 = -16.34 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:08 2006