Locus 5180

Sequence ID 2L_DroMel_CAF1
Location 14,666,665 – 14,666,761
Length 96
Max. P 0.588201
window8247

overview

Window 7

Location 14,666,665 – 14,666,761
Length 96
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 83.50
Mean single sequence MFE -29.00
Consensus MFE -20.78
Energy contribution -21.68
Covariance contribution 0.89
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.72
SVM decision value 0.11
SVM RNA-class probability 0.588201
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14666665 96 - 22407834
AGUUGCU---GCUGCAAUUGCAAUUUCGGUUUUUUGU------------ACUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUCAAAAGUGGG
.....(.---.((....(((.(((.((((((..(((.------------.(((((.(((..((((((....))))))..))))))))))).)))))).)))))).))..). ( -28.50)
>DroSec_CAF1 21227 99 - 1
AGUUGCUGCUGCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAUCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG
(((((((((....)))...))))))((((((.....(------------(((((..(((..((((((....))))))..))).))))))..))))))((((....)))).. ( -32.40)
>DroSim_CAF1 22901 99 - 1
AGUUGCUGCUGCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAUCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG
(((((((((....)))...))))))((((((.....(------------(((((..(((..((((((....))))))..))).))))))..))))))((((....)))).. ( -32.40)
>DroEre_CAF1 21284 96 - 1
AGUUGCU---GCUGCAAUUGCAAUUUCGGCUUUUUGU------------GCUGGGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAACGUGGC
....((.---.((((....)))...((((.((....(------------((((((.(((..((((((....))))))..))))))))))..)))))).........)..)) ( -29.40)
>DroYak_CAF1 21658 96 - 1
AGUUGCU---GCUGCAAUUGCAAUUUCGGUUUUUUGU------------GCUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAAUAAAAAGUGGG
.....(.---.((((....))....((((((.....(------------((((((.(((..((((((....))))))..))))))))))..))))))........))..). ( -31.90)
>DroAna_CAF1 21098 98 - 1
GGUCGCU---GUUGCAACUACAAUUUCGUUUUUUUCUUUCGAGUGUUAAGCUGGGGAGUGAAUUGUGUAAUCAAGAUGAGCUUUCUGCGAUAAUCA----CAAAA------
.(((((.---(..((...((((((((.........((..(.(((.....))).)..)).))))))))...((.....))))...).))))).....----.....------ ( -19.40)
>consensus
AGUUGCU___GCUGCAAUUGCAAUUUCGGUUUUUUGU____________GCUGAGCAGCGAAUUGUGUAAUCGCGAUGAGCUUUCAGCGAUAACCGACAUUAAAAAGUGGG
((((((.......))))))......((((((.((...............((((((.(((..((((((....))))))..))))))))))).)))))).............. (-20.78 = -21.68 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:00 2006