Locus 5174

Sequence ID 2L_DroMel_CAF1
Location 14,659,260 – 14,659,360
Length 100
Max. P 0.784884
window8239

overview

Window 9

Location 14,659,260 – 14,659,360
Length 100
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.51
Mean single sequence MFE -27.28
Consensus MFE -16.42
Energy contribution -16.22
Covariance contribution -0.19
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value 0.57
SVM RNA-class probability 0.784884
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14659260 100 + 22407834
UUUUCUCUUUCUGCGGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.60)
>DroVir_CAF1 11864 77 + 1
---------------------CUUAGGCAGAGCA----AAACAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
---------------------........(((((----(((((((((..((((((((.....))))))))))))))))........)))))).......... ( -20.40)
>DroEre_CAF1 13926 100 + 1
UUUUCUCUUUCUGCGGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.60)
>DroYak_CAF1 14340 100 + 1
UUUUCUCUUUCUGCAGCGG--UUUAAGGAGAGAAGCAGCAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
((((((((((..((....)--)..)))))))))).((((((((((((..((((((((.....))))))))))))))))).)))(((((....)))))..... ( -31.40)
>DroMoj_CAF1 14062 79 + 1
-----------------GG--UUUAGACCAAGUA----AAACAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
-----------------..--......(((.((.----.((((((((..((((((((.....)))))))))))))))).))))).................. ( -17.60)
>DroAna_CAF1 13389 99 + 1
UUUUCUCUUUCGGCUGAAAACGCUAGAGAGAGAGG---CAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
.((((((((((((((....).))).))))))))))---(((((((((..((((((((.....)))))))))))))))))((..(((((....)))))..)). ( -31.10)
>consensus
UUUUCUCUUUCUGC_GCGG__UUUAAGGAGAGAAG___CAGCAACUUGGCUACUUUUCAACUAGAAGUAGGAGUUGUUGACUGGAAUUGCUCAAUUUGUGUG
.......................((((..(((......(((((((((..((((((((.....)))))))))))))))))..........)))..)))).... (-16.42 = -16.22 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:52 2006