Locus 5171

Sequence ID 2L_DroMel_CAF1
Location 14,651,856 – 14,651,947
Length 91
Max. P 0.815827
window8234

overview

Window 4

Location 14,651,856 – 14,651,947
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 93.63
Mean single sequence MFE -29.74
Consensus MFE -26.67
Energy contribution -26.76
Covariance contribution 0.09
Combinations/Pair 1.12
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.66
SVM RNA-class probability 0.815827
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14651856 91 + 22407834
UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAAA-AAAAGCGGAUCGAAGCGAGGGCCAAA
...(.((..(((((((((-(...((.((.((((((....)))))).)).))........((.....-.....))))))).)))))..)))... ( -29.80)
>DroSec_CAF1 6642 90 + 1
UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA--AAAAGCGGAUCGAAGCGAGGCCCAAA
...(((((.((((.((..-...))...)))))))))((((.((((((....(((.(((.......--.)))..)))..)))))).)))).... ( -30.10)
>DroSim_CAF1 7940 89 + 1
UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA---AAAUCGGAUCGAAGCGAGGGCCAAA
...(.((..(((((((((-(...((.((.((((((....)))))).)).))........(((...---...)))))))).)))))..)))... ( -32.30)
>DroEre_CAF1 6248 93 + 1
UCAGUGCAAUCGCUCGAUUCAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAAAAAAAAGCGAAUCAAAGCGAGGGCCAAA
...(((((.((((.(((....)))...)))))))))((((.(((((...(((...(((......)))...)))......)))))..))))... ( -26.50)
>DroYak_CAF1 6718 89 + 1
UCAGUGCAAUCGCUCGAU-CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA---AAAGCGGAUCGAAGCGAGGGCCAAA
...(.((..(((((((((-(...((.((.((((((....)))))).)).))........((....---....))))))).)))))..)))... ( -30.70)
>DroAna_CAF1 6295 88 + 1
UCUGUGUAGCCGCUUGAU-CGACGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAA----AAAGCGGAUCGAAGCGAGGGCCAAA
...(((((.((((.....-........)))))))))((((.((((((....(((.(((......----)))..)))..))))))..))))... ( -29.02)
>consensus
UCAGUGCAAUCGCUCGAU_CAUCGCCUGCGGUGCGCGGUCGCGCUUCAAGCUCCAUUUACGAAAA___AAAGCGGAUCGAAGCGAGGGCCAAA
...(((((.((((.((......))...)))))))))((((.((((((....(((...................)))..))))))..))))... (-26.67 = -26.76 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:47 2006