Locus 5157

Sequence ID 2L_DroMel_CAF1
Location 14,615,608 – 14,615,710
Length 102
Max. P 0.941892
window8213 window8214

overview

Window 3

Location 14,615,608 – 14,615,710
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -25.00
Consensus MFE -22.83
Energy contribution -23.17
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.91
SVM decision value 1.21
SVM RNA-class probability 0.931189
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14615608 102 + 22407834
UACUUGCAUCUCUUCAAAUUUACUUAAUUGAUCAAGUAAGUAGCAAAAGGGCACACAAUUGAAGGAAAUUCUUGUUUAAUUGAAUUUAUUAUGCAAGUGCGG
(((((((((.(((((((((((((((........)))))))).((......))......)))))))((((((..........))))))...)))))))))... ( -24.60)
>DroSec_CAF1 24038 102 + 1
UACUUGCAUCUCUUCAAAUUUACUUAAUUGAUCAAGUAAGUAGCAAAAGGGCGACCAAUUGAAGGAAAUUCUUGUUUAAUUUAAUUUAUAAUGCAAGUGCGG
(((((((((.(((((((((((((((........)))))))).......((....))..)))))))((((....)))).............)))))))))... ( -23.60)
>DroSim_CAF1 29316 102 + 1
UACUUGCAUCUCUUCAAAUUUACUUAAUUGAUCAAGUAAGUAGCAAGAGGGCGACCAAUUGAAGGAAAUUCUUGUUUAAAUGAAUUUAUUAUGCAAGUGCGG
(((((((((.(((((((((((((((........)))))))).......((....))..)))))))((((((..........))))))...)))))))))... ( -26.80)
>consensus
UACUUGCAUCUCUUCAAAUUUACUUAAUUGAUCAAGUAAGUAGCAAAAGGGCGACCAAUUGAAGGAAAUUCUUGUUUAAUUGAAUUUAUUAUGCAAGUGCGG
(((((((((.(((((((((((((((........)))))))).((......))......)))))))((((((..........))))))...)))))))))... (-22.83 = -23.17 +   0.33)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 4

Location 14,615,608 – 14,615,710
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 95.42
Mean single sequence MFE -22.43
Consensus MFE -20.07
Energy contribution -20.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.85
Structure conservation index 0.89
SVM decision value 1.32
SVM RNA-class probability 0.941892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14615608 102 - 22407834
CCGCACUUGCAUAAUAAAUUCAAUUAAACAAGAAUUUCCUUCAAUUGUGUGCCCUUUUGCUACUUACUUGAUCAAUUAAGUAAAUUUGAAGAGAUGCAAGUA
....((((((((...((((((..........)))))).((((((..(((.((......)))))((((((((....))))))))..))))))..)))))))). ( -23.20)
>DroSec_CAF1 24038 102 - 1
CCGCACUUGCAUUAUAAAUUAAAUUAAACAAGAAUUUCCUUCAAUUGGUCGCCCUUUUGCUACUUACUUGAUCAAUUAAGUAAAUUUGAAGAGAUGCAAGUA
....(((((((((.......(((((.......))))).((((((...((.((......)).))((((((((....))))))))..)))))).))))))))). ( -21.30)
>DroSim_CAF1 29316 102 - 1
CCGCACUUGCAUAAUAAAUUCAUUUAAACAAGAAUUUCCUUCAAUUGGUCGCCCUCUUGCUACUUACUUGAUCAAUUAAGUAAAUUUGAAGAGAUGCAAGUA
....((((((((...((((((..........)))))).((((((...((.((......)).))((((((((....))))))))..))))))..)))))))). ( -22.80)
>consensus
CCGCACUUGCAUAAUAAAUUCAAUUAAACAAGAAUUUCCUUCAAUUGGUCGCCCUUUUGCUACUUACUUGAUCAAUUAAGUAAAUUUGAAGAGAUGCAAGUA
....((((((((...((((((..........)))))).((((((......((......))...((((((((....))))))))..))))))..)))))))). (-20.07 = -20.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:28 2006