Locus 515

Sequence ID 2L_DroMel_CAF1
Location 1,580,807 – 1,580,901
Length 94
Max. P 0.605842
window818

overview

Window 8

Location 1,580,807 – 1,580,901
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 85.98
Mean single sequence MFE -24.68
Consensus MFE -20.86
Energy contribution -21.50
Covariance contribution 0.64
Combinations/Pair 1.15
Mean z-score -1.62
Structure conservation index 0.85
SVM decision value 0.15
SVM RNA-class probability 0.605842
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1580807 94 - 22407834
CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG
(((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -27.50)
>DroSec_CAF1 59309 94 - 1
CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCAUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG
(((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -28.20)
>DroSim_CAF1 61603 94 - 1
CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCAUUGGGAUCUGGGGAAAAUGGGUUAUUUCUG
(((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).(((((........))))). ( -28.20)
>DroEre_CAF1 60521 90 - 1
CAGCUUUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGCUAAAAUGGGUUAUU----
...((..(((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))..))((((((.......))))))...---- ( -25.60)
>DroWil_CAF1 94082 74 - 1
CGA-UUCUGGCAUUGUUUGUUUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUG----AUGCUUUUAGGU----------GUGUCUUAU-----
.((-(((..((..((((.....))))((.(((((....))))).)))))))))(----((((........----------)))))....----- ( -13.00)
>DroYak_CAF1 59460 90 - 1
CAGCUUUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGUAAAAUGGGUUAUU----
...((..(((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))..))((((((.......))))))...---- ( -25.60)
>consensus
CAGCUCUUGGCAUUGUUUGUCUGACAGUUGUAAAGUGAUUUGCUACGUGAAUUGGGCGAUGCCGUUGGGAUCUGGGGAAAAUGGGUUAUU____
(((.((((((((((((..(..(.((.((.(((((....))))).)))).)..)..)))))))))...))).))).................... (-20.86 = -21.50 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:58 2006