Locus 5149

Sequence ID 2L_DroMel_CAF1
Location 14,600,242 – 14,600,334
Length 92
Max. P 0.967501
window8202

overview

Window 2

Location 14,600,242 – 14,600,334
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.64
Mean single sequence MFE -19.45
Consensus MFE -14.08
Energy contribution -13.67
Covariance contribution -0.42
Combinations/Pair 1.12
Mean z-score -1.61
Structure conservation index 0.72
SVM decision value 1.61
SVM RNA-class probability 0.967501
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14600242 92 - 22407834
UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCA--ACAAAUGUAACAACAGCAGCA-----
......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-.......)))--.....(((....)))))....----- ( -20.00)
>DroPse_CAF1 11474 100 - 1
UAGCCCCGACUGUUCACCCCCCUCCAAGGCAU--ACUGGAAGGGACGUCGAGCAAUGGACAACAAAUCAA-ACUAACCCCCCAACAUACAU------GGCAGCAAUGUU
..(((.....((((....(((.((((.(....--.))))).)))..(((.(....).)))..........-...........)))).....------)))......... ( -20.30)
>DroSec_CAF1 8719 92 - 1
UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCC--ACAAAUGUAACAACAGCAGCA-----
......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-........))--)....(((....)))))....----- ( -19.60)
>DroSim_CAF1 9017 92 - 1
UAACAACGACUGUUCACCCCCUUCCAAUGCAAAAAGUGGAAGGGACGUCGAGCAAUGGA---------AA-ACUAACCCCC--ACAAAUGUAACAACAGCAGCA-----
......((((.((.....((((((((.(......).)))))))))))))).((..(((.---------..-........))--)....(((....)))))....----- ( -19.60)
>DroMoj_CAF1 5152 87 - 1
UAACAACGACUGUUCGCCCCCCUCCGC--CAUUAGCUGGAAGGGACGCUGAGCAAUGGA---------AAAACUGAUCACA--AUA---AUACACACAACAAC------
......(.(.(((((((.(((.(((((--.....)).))).)))..)).))))).).).---------.............--...---..............------ ( -16.90)
>DroPer_CAF1 11396 100 - 1
UAGCCCCAACUGUUCACCCCCCUCCAAGGCAU--ACUGGAAGGGACGUCGAGCAAUGGACAACAAAUCAA-ACUAAUCCCCCAACAUACAU------GGCAGCAAUGUU
..(((.....((((....(((.((((.(....--.))))).)))..(((.(....).)))..........-...........)))).....------)))......... ( -20.30)
>consensus
UAACAACGACUGUUCACCCCCCUCCAAUGCAAAAACUGGAAGGGACGUCGAGCAAUGGA_________AA_ACUAACCCCC__ACAAAUAUAACAACAGCAGCA_____
......(.(.(((((((.(((.((((..........)))).)))..)).))))).).)................................................... (-14.08 = -13.67 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:17 2006