Locus 5132

Sequence ID 2L_DroMel_CAF1
Location 14,572,358 – 14,572,454
Length 96
Max. P 0.536012
window8174

overview

Window 4

Location 14,572,358 – 14,572,454
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 87.33
Mean single sequence MFE -26.70
Consensus MFE -21.23
Energy contribution -21.87
Covariance contribution 0.64
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.79
SVM decision value 0.00
SVM RNA-class probability 0.536012
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14572358 96 - 22407834
GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUAUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAUAUGCAAGCCGCUCGCACCAAAU------AUGG
.........(((.(((((((...))))))).))).(((((((........)))))))..(((((((((....(....)..)))))))))...------.... ( -27.40)
>DroSec_CAF1 103968 96 - 1
GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUGUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU------AAGG
.........(((.(((((((...))))))).))).(..((((........))))..)..(((((((((............)))))))))...------.... ( -26.40)
>DroSim_CAF1 91429 96 - 1
GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUGUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU------AGGG
.........(((.(((((((...))))))).))).(..((((........))))..)..(((((((((............)))))))))...------.... ( -26.40)
>DroEre_CAF1 98411 94 - 1
GAAAAUGCGAAUAUAAUUGCAGUGCAGUUAAUUUAUC--GUCGCUGCCAACACAUGAAGUGGUGCGAGAAGUGCAAGCCGCUUGCUGCAA------GGAAUC
................((((((((((((.........--...))))).........((((((((((.....)))..))))))))))))))------...... ( -23.30)
>DroYak_CAF1 95985 100 - 1
GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUU--GUCGCUGCCAACACAUGAAGUGGUGCGAGAAGUGCAAGCCCCUUGCACCAAAUAAGUGGAAGU
.....(((....)))...((((((((((......)))--).))))))...(((.((...(((((((((..((....))..)))))))))..)).)))..... ( -29.70)
>DroAna_CAF1 41652 95 - 1
GAAAAUGCGAAAAUAAUUGCAGUGCAGUUAAUUUAUUAUGUCGCUGCCAAGACGUAAAGUGGUGCGAGAUGUGCAGGCC-CUCGCACCAAAC------CAGU
.........(((.(((((((...))))))).))).(((((((........)))))))..(((((((((..((....)).-)))))))))...------.... ( -27.00)
>consensus
GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUU_UGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU______AAGG
.............(((((((...))))))).....(((((((........)))))))..(((((((((............)))))))))............. (-21.23 = -21.87 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:50 2006