Locus 513

Sequence ID 2L_DroMel_CAF1
Location 1,549,148 – 1,549,239
Length 91
Max. P 0.819839
window816

overview

Window 6

Location 1,549,148 – 1,549,239
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -24.05
Consensus MFE -12.94
Energy contribution -13.67
Covariance contribution 0.73
Combinations/Pair 1.29
Mean z-score -2.33
Structure conservation index 0.54
SVM decision value 0.68
SVM RNA-class probability 0.819839
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1549148 91 + 22407834
AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUACAAAGUGUGUGAAA-AUACAGAA
.....((((..(((((((((.(((((..................))))).).))))))))..))))........(((((....-)))))... ( -23.57)
>DroSec_CAF1 30861 91 + 1
AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA-AUACAGCA
.....((((..(((((((((.(((((..................))))).).))))))))..)))).(((....(((((....-)))))))) ( -24.27)
>DroSim_CAF1 32877 91 + 1
AAAUACUCGUAGAACAAUGGCAGCCACAAAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA-AUACAGCA
.....((((..(((((((((.(((((..................))))).).))))))))..)))).(((....(((((....-)))))))) ( -24.27)
>DroEre_CAF1 31191 91 + 1
AAAUGCUCGUGGAACAAUGGCGACCACAGAAUGUUUGAUAAAUUUGGCUGCUCAUUGUUCGCCGGGAUGCAAAGUGUUAGAAA-AUACAGCA
.....((((..(((((((((((.(((..................))).))).))))))))..)))).(((...(((((....)-)))).))) ( -23.17)
>DroYak_CAF1 30335 91 + 1
AAAUACUCGCAGAACAAUGGCAGCCACAAAACGUUUGAUAAAUUCGGUUGCUCAUUGUUCGCCGAGAUACAAUGUGUUAGAAA-AUACAGCA
.....((((..((((((((((((((((.....))..((.....)))))))).))))))))..))))......((((((....)-)))))... ( -28.60)
>DroPer_CAF1 63968 82 + 1
CUGUACUCGUAGAAUAACGACACAGCCAGUAUGUUUG----------UCUUUCAUUGUUCUCUCCAGUCGAAAGAGUGUCAAAUGUACAGUG
((((((..((......))(((((...(((.....)))----------((((((((((.......)))).)))))))))))....)))))).. ( -20.40)
>consensus
AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA_AUACAGCA
.....((((..(((((((((.((((....................)))).).))))))))..)))).......................... (-12.94 = -13.67 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:56 2006