Locus 512

Sequence ID 2L_DroMel_CAF1
Location 1,543,147 – 1,543,259
Length 112
Max. P 0.581544
window815

overview

Window 5

Location 1,543,147 – 1,543,259
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 91.07
Mean single sequence MFE -38.33
Consensus MFE -31.50
Energy contribution -32.62
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.10
SVM RNA-class probability 0.581544
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1543147 112 - 22407834
GGGCACUUGAAUUCCCUUUUUGGGUGCUCGUUGUCUUACUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUUGGCUCCAGUUGCCAUCUGCUCCACGAUGGAGUGUAC
(((((((..((.......))..)))))))(((((((.((((((((.......))))..)))).))))))).....((((.......))))...(((((.....))))).... ( -42.70)
>DroSec_CAF1 24887 112 - 1
GGGCACUUGAAUUCCCUUUUUGGGAGCUCGUUGCCUGUCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUUGGCUCCAGUUGCCAUCUGCUCCACGAUGGAGUGUAC
(((((..(((.(((((.....))))).))).)))))..(((((((.......)))(.(((((..((((((((.........))))))))....)).))))...))))..... ( -41.10)
>DroEre_CAF1 23421 112 - 1
GGGCACUUGAAUUCCCUUUUUGGUAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUCCAGCGGCCAUCUGCUGCACGAUGAAGCCUAC
(((((((.(((......))).)))...(((((((.......((((.......)))).((((((((((....).)))))).)))(((((.....)))))))))))).)))).. ( -33.70)
>DroYak_CAF1 24305 112 - 1
GAGCACUUGAAUUCCCUUUUUGGCAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUUCAGUUGCCAUCUGCUCAACGAUGAUGCCUAC
(((((........(((...((((.((....((((((......))))))..)).)))).)))...(((((((((.......)))))))))...)))))............... ( -35.80)
>consensus
GGGCACUUGAAUUCCCUUUUUGGGAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUCCAGUUGCCAUCUGCUCCACGAUGAAGCCUAC
(((((........(((...(((((((....((((((......))))))..))))))).)))...((((((((.........))))))))...)))))............... (-31.50 = -32.62 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006