Locus 5114

Sequence ID 2L_DroMel_CAF1
Location 14,540,817 – 14,540,909
Length 92
Max. P 0.516421
window8144

overview

Window 4

Location 14,540,817 – 14,540,909
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 83.42
Mean single sequence MFE -25.78
Consensus MFE -19.61
Energy contribution -20.70
Covariance contribution 1.09
Combinations/Pair 1.17
Mean z-score -1.47
Structure conservation index 0.76
SVM decision value -0.03
SVM RNA-class probability 0.516421
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14540817 92 + 22407834
-----CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU
-----.((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).))))))))))).......... ( -27.60)
>DroVir_CAF1 11759 81 + 1
GACGU----------CGCUUUGAUUAAUGAGCCUGGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAACGC------
..(((----------.((((........))))..((.(((((....))).))..(((((((((((...)))))))))))))......))).------ ( -19.00)
>DroSec_CAF1 72735 92 + 1
-----CUGUUGUGGUCACUUUGAUCGAUGGGACCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU
-----.((((((((((.......(((........)))(((((....))).))....((((((((....).))))))))))))))))).......... ( -26.40)
>DroEre_CAF1 67814 92 + 1
-----CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCGGCAAUUAAUAAAGCCAUGGACUUUGUUGGCCGCAACAAUAUUCCAGU
-----.((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).))))))))))).......... ( -27.00)
>DroAna_CAF1 11200 92 + 1
-----CUGUUGUGGUCAUUUUGAUGGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU
-----.((((((((((.......(((.......))).(((((....))).))....(((((((((...))))))))))))))))))).......... ( -28.00)
>DroPer_CAF1 84491 86 + 1
-----CUGUUGCGGUCAGUUUGAUUGAUGAGCCCAGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAUCGAGAU------
-----.((.(((((((((.(((((((....((.....))(((....)))..)))))))(((((((...)))))))))))))))).))....------ ( -26.70)
>consensus
_____CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU
......((((((((((.....................(((((....))).))....((((((((....).))))))))))))))))).......... (-19.61 = -20.70 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006