| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,541,125 – 1,541,217 |
| Length | 92 |
| Max. P | 0.589420 |
| Location | 1,541,125 – 1,541,217 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -20.34 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1541125 92 + 22407834 AACGCUUAACUUUCAAAUUAGGGCCAAAA-CAGGC---CGACAUGAGGCGGAAGUUUCGAUUUGCCGUCUGCGGCU-AGCCCAAGGCCC--CAAGAA-AU- ....................(((((....-..(((---.....((((((....))))))....((((....)))).-.)))...)))))--......-..- ( -28.00) >DroSec_CAF1 22860 95 + 1 AACGCUUAACUUUCAAAUUAGGGCCAAAA-CAGGCCGCCGACAUGAGGCGGAAGUUUCGAUUUGCCGUCUGCGGCC-AGCCGGAGGCCC--CAAGAA-AU- ....................(((((....-..((((((.(((..(((((....)))))(......)))).))))))-.......)))))--......-..- ( -33.82) >DroSim_CAF1 25664 95 + 1 AACGCUUAACUUUCAAAUUAGGGCCAAAA-CAGGCUGCGGACAUGAGGCGGAAGUUUCGAUUUGCCGUCUGCGGCU-AGCCGGAGGCCC--CAAGAA-AU- ....................(((((....-(((((.(((((..((((((....)))))).))))).)))))(((..-..)))..)))))--......-..- ( -34.30) >DroYak_CAF1 22144 93 + 1 AACGCUUAACUUUCAAAUUAGGGCCAAAAACGGGC---CGACAUGAGGCGGAAGUUUCGAUUUGUUGUCUGCGGCU-AGCCGGAGGCCC--CGAGAA-AA- ..........((((...(..(((((.....(((((---.((((((((((....))))))...)))))))))(((..-..)))..)))))--..))))-).- ( -30.80) >DroMoj_CAF1 32861 91 + 1 AACGCUUAACUUUCAAAUUAAGGCCCA-----GGUCCCAGGCAGCAGGCGGAAGUUUCGAUUUG---UCAGUGGGUCACCCGGCGGGCCUUUUGUAA-AU- ...................(((((((.-----((.((((((((.(((((....)))).)...))---))..))))....))...)))))))......-..- ( -25.90) >DroAna_CAF1 50135 89 + 1 AACGCUUAACUUUCAAAUUAAGGCCA------GGC---CGACAUGAGGCGGAAGUUUCGAUUUGUUGUCUGCGGCU-AGCCGGAGGCCU--CUGCGACGUU (((((((((........)))))((.(------(((---(((((((((((....))))))......))))..(((..-..)))..)))))--..))..)))) ( -27.80) >consensus AACGCUUAACUUUCAAAUUAGGGCCAAAA_CAGGC___CGACAUGAGGCGGAAGUUUCGAUUUGCCGUCUGCGGCU_AGCCGGAGGCCC__CAAGAA_AU_ .............((((((...(((.......))).........(((((....)))))))))))..((((.((((...)))).)))).............. (-20.34 = -20.48 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006