| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,533,474 – 1,533,577 |
| Length | 103 |
| Max. P | 0.545349 |
| Location | 1,533,474 – 1,533,577 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -12.31 |
| Energy contribution | -11.98 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1533474 103 - 22407834 UUUUUCUUCUACUUUUUUUCGGUGGCCAUGAGUGUGCAAAUUCCUUUCGGCUU--UUGUCUAGC-UCAACUCGCAUUUUAUAAUGUGCAUAUUUUAUAACAUGUUU ........(((((.......)))))...(((((..(((((..((....))..)--))))...))-)))....((((........)))).................. ( -18.00) >DroVir_CAF1 25952 91 - 1 -------GCUGCUCU-UGU---U--GCAUGAGUGUGCAAAUUCCUUUCGGCUU--UUGUCUAGCUUCGCAUCGCAUUUUAUAAUGUGCAUAUUUUAUAACAUGCUU -------...((...-(((---(--(...((((((((...........((((.--......)))).......(((((....)))))))))))))..))))).)).. ( -18.80) >DroGri_CAF1 23353 90 - 1 -------GCUUCUCU-UGU---U--GCAUGAGUGUGCAAAUUUCAUUCGGCUU--UUGUCUAGC-UCGCUUCGCAUUUUAUAGUGUGCAUAUUUUAUAACAUGCUA -------((......-(((---(--(...((((((((..........(((((.--......)))-.))....(((((....)))))))))))))..))))).)).. ( -17.20) >DroMoj_CAF1 21470 90 - 1 -------UCUACUCU-UGU---U--GCAUGACUGUGCGAAUUCCUCUCGGCUU--UUGUCUAGC-GCGCAUCGCAUUUUAUAAUGUGCAUAUUUUAUAACAUGCUU -------........-...---.--(((((..((((((.......((.(((..--..))).)))-)))))..((((........))))...........))))).. ( -19.81) >DroAna_CAF1 40138 92 - 1 ------------UAG-UUUCAGCGACCGUGAGUGUGCAAAUUCCUUUUGGCUUUUUUGUCUAGC-CCGACUCACAUUUUAUAAUGUGCAUAUUUUAUAACAUGUUU ------------.((-((...(((..(....)..)))...........((((.........)))-).))))((((((....))))))................... ( -14.40) >DroPer_CAF1 45036 89 - 1 -------------GU-CUUCGGUGGCCGUGAGUGUGCAAAUUCCUUUCGGCUU--UUGUCUAGC-UCCGCUCGCAUUUUAUAAUGUGCAUAUUUUAUGGCAUGUUU -------------..-........(((((((((((((...........((((.--......)))-)......(((((....)))))))))).))))))))...... ( -21.40) >consensus ________CU_CUCU_UGU___U__CCAUGAGUGUGCAAAUUCCUUUCGGCUU__UUGUCUAGC_UCGCCUCGCAUUUUAUAAUGUGCAUAUUUUAUAACAUGCUU ..........................(((((((((((...........(((......)))............(((((....))))))))))))......))))... (-12.31 = -11.98 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:53 2006