| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,528,220 – 1,528,321 |
| Length | 101 |
| Max. P | 0.975800 |
| Location | 1,528,220 – 1,528,321 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.93 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -15.15 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.975800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1528220 101 - 22407834 -CAUCUUGGCGAACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUGCCACUGCCUUCCCGUUUA-CAACUGCC-----GAG--UUGCA----CU -((.(((((((..(((((((((((....((((((.............))))))..))))))))))).............((...-..))))))-----)))--.))..----.. ( -25.22) >DroVir_CAF1 11839 106 - 1 GAAACAUGGCGCAGAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUA-CAACUGCC-----GGU--CUCCUGAUCCU .......(((((((((....))))))..((((((.............)))))).((((((.........)))))).........-.....)))-----(((--(....)))).. ( -21.92) >DroWil_CAF1 14122 104 - 1 -UGUCUUGGUGCCCAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUCCCAAAUGUC-----GAGCGUUACA----UA -.....(((((....(((((((((....((((((.............))))))..)))))))))))))).........(((((..(....)..-----))))).....----.. ( -20.02) >DroMoj_CAF1 13576 95 - 1 GGAACAUGGCGCAAAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCUCA--------GCC-----AG---CUACUGAA--- ((((.((((.....((((((((((....((((((.............))))))..)))))))))).)))))))).....(((--------(..-----..---...)))).--- ( -22.52) >DroAna_CAF1 34903 94 - 1 -CUUCUUGGUAAAAAAGUUUUUCUGCUCCACUUAUGCCGAAACUAAUUAAGUGCAGGAAAAAGUUGCCAUUGCCAUCCCGGUUG-CAACUGCC--------------A----CA -.....((((.......(((((((((...(((((.............))))))))))))))((((((....(((.....))).)-))))))))--------------)----.. ( -24.22) >DroPer_CAF1 39120 106 - 1 -CUUCUGGGCGGACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUGCCAUUUCCUUCCCGUUUA-CAACUGCCACGCAGCG--UGGCA----CU -.....(((.((((((((((((((....((((((.............))))))..))))))))))).....)))..))).....-....(((((((...))--)))))----.. ( -32.92) >consensus _CAUCUUGGCGCACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUA_CAACUGCC_____GAG__UUACA____CU ......((((....((((((((((....((((((.............))))))..))))))))))))))............................................. (-15.15 = -15.62 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006