Locus 5081

Sequence ID 2L_DroMel_CAF1
Location 14,509,968 – 14,510,072
Length 104
Max. P 0.548904
window8088

overview

Window 8

Location 14,509,968 – 14,510,072
Length 104
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 94.29
Mean single sequence MFE -21.04
Consensus MFE -15.70
Energy contribution -15.42
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.97
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.548904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14509968 104 - 22407834
GACAG----CCAACUAGUCUUGGCUGGUACUAUCAGCAAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
..(((----((((......)))))))(((...(((((.....))).))....))).((((((((((......)))))).))))......................... ( -20.40)
>DroSec_CAF1 41546 108 - 1
GACAGCCAGCCAACUAGUCUUUGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
....((((((.((......)).))))))....(((((.....))).))........((((((((((......)))))).))))......................... ( -19.70)
>DroSim_CAF1 26670 108 - 1
GACAGCCAGCCAACUAGUCUUUGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
....((((((.((......)).))))))....(((((.....))).))........((((((((((......)))))).))))......................... ( -19.70)
>DroEre_CAF1 35041 103 - 1
GACAG----CCAGCUAGUCUUGGCUGCCACUAUCAGCCAAGAGCUCGAA-AAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
....(----(.(((...(((((((((.......))))))))))))....-......((((((((((......)))))).))))))....................... ( -23.10)
>DroYak_CAF1 31185 104 - 1
GACAG----CCAACUAGCCUUGGCUGGCACUAUCAGCGAAGAGCUCGAAAAAUACAUUCGGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
..(((----((((......)))))))((....(((((.....))).))........((((((((((......)))))).))))))....................... ( -22.30)
>consensus
GACAG____CCAACUAGUCUUGGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU
..........((((.((((((.(((((.....))))).))).))).).........((((((((((......)))))).))))............))).......... (-15.70 = -15.42 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:29 2006