Locus 5077

Sequence ID 2L_DroMel_CAF1
Location 14,507,721 – 14,507,837
Length 116
Max. P 0.558824
window8082

overview

Window 2

Location 14,507,721 – 14,507,837
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -20.75
Consensus MFE -16.83
Energy contribution -16.33
Covariance contribution -0.50
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.81
SVM decision value 0.05
SVM RNA-class probability 0.558824
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14507721 116 + 22407834
ACUCUCCCACUGCUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUACAUAGAAAUCAAUUCCAAUCUGGGAACUUGAGCUAUCAAUCAUUCAGUCGGCUGAAGAAAGUCCUCAAC
................(((.............................((((...((((((((......)))).)))).))))...((.(((((....)))))))..)))...... ( -16.80)
>DroSec_CAF1 39365 116 + 1
ACUUUCAACCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUGAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC
((((((.........((((((............)))))).....((((.(((...((((((((......)))).)))).)))))))(((.((.....))))).))))))....... ( -21.30)
>DroSim_CAF1 24070 116 + 1
ACUAUCCCCCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUGAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC
....((((.......((((((............)))))).......((.(((((.....))))).)).)))).(((.((((..(.........)..)))).)))............ ( -21.20)
>DroEre_CAF1 32859 115 + 1
ACUCUCC-CCUGUGUAGACUUUAAAUACCACAUAAAUUUGAAAUUUAAAUGGAAAUCAAUUCCAAUUUCGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC
.......-....((..((((((..............((((((((.....(((((.....))))))))))))).(((.((((..(.........)..)))).)))))))))..)).. ( -23.70)
>consensus
ACUCUCCCCCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUAAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC
................(((...(((((.......))))).........((((...((((((((......)))).)))).))))..........)))((((......))))...... (-16.83 = -16.33 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:23 2006