Locus 5074

Sequence ID 2L_DroMel_CAF1
Location 14,505,457 – 14,505,573
Length 116
Max. P 0.965219
window8076

overview

Window 6

Location 14,505,457 – 14,505,573
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 91.47
Mean single sequence MFE -33.10
Consensus MFE -27.04
Energy contribution -28.88
Covariance contribution 1.84
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.82
SVM decision value 1.58
SVM RNA-class probability 0.965219
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14505457 116 - 22407834
CGUACCCAGUCGGCUUGCCCCGGUCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU
.((((...(((((((((....((.......(((((((.....)))))))...((((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -36.10)
>DroSec_CAF1 37131 116 - 1
CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU
.((((...(((((((((....(((......(((((((.....)))))))....(((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -37.00)
>DroSim_CAF1 21837 116 - 1
CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU
.((((...(((((((((....(((......(((((((.....)))))))....(((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -37.00)
>DroEre_CAF1 30720 116 - 1
CGUACGCAGUCGGAUUGCUCCGCUCUCAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUAAUACGGUGUAAAUCAAUUGCGUGCCACCAGGCCGACGUGCAGAUU
.(((((((((.((.((((.(((.((((...(((((((.....)))))))......))))...((....))....))).)))).)).)))))(.(((....))))...))))..... ( -31.80)
>DroYak_CAF1 26383 102 - 1
CGUUCGCAGU--------------CUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCUGUGCCAGCAGGCCGACGUGCAGAUU
.....(((.(--------------(((...(((((((.....)))))))......))))....)))((((....(((((.....)....((((....))))))))..))))..... ( -23.60)
>consensus
CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU
.((((...(((((((((.............(((((((.....)))))))...((((.(((...(((((........)))))......)))))))....)))))))))))))..... (-27.04 = -28.88 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:18 2006