Locus 5051

Sequence ID 2L_DroMel_CAF1
Location 14,482,165 – 14,482,280
Length 115
Max. P 0.543929
window8033

overview

Window 3

Location 14,482,165 – 14,482,280
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -24.97
Consensus MFE -22.67
Energy contribution -22.93
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.543929
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14482165 115 - 22407834
UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU-----UGAAA
.((((((((((.((((......)))).))))))...)))).......((((((....((........))...........((((..((((.......))))..)))))))-----))).. ( -24.90)
>DroSec_CAF1 6745 114 - 1
UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAA------UGAAA
....(((((((.((((......)))).)))))))..((((((....(.......)..((........)).))))))....((((..((((.......))))..))))..------..... ( -23.80)
>DroEre_CAF1 8198 116 - 1
UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAGGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU----CCAAAA
....(((((((.((((......)))).)))))))..(((((.....(((.......))).....................((((..((((.......))))..)))).))----)))... ( -25.40)
>DroYak_CAF1 2652 120 - 1
UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAGGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUCCGACUGAACAUGAAA
.((((((((((.((((......)))).))))))...))))...((((((........((........))................(((((......))))).....))))))........ ( -25.80)
>consensus
UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU_____UGAAA
....(((((((.((((......)))).)))))))..((((((....(.......)..((........)).))))))....((((..((((.......))))..))))............. (-22.67 = -22.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:38 2006