Locus 504

Sequence ID 2L_DroMel_CAF1
Location 1,510,565 – 1,510,679
Length 114
Max. P 0.902289
window806

overview

Window 6

Location 1,510,565 – 1,510,679
Length 114
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 87.51
Mean single sequence MFE -34.76
Consensus MFE -26.74
Energy contribution -26.90
Covariance contribution 0.16
Combinations/Pair 1.17
Mean z-score -2.10
Structure conservation index 0.77
SVM decision value 1.02
SVM RNA-class probability 0.902289
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1510565 114 + 22407834
UGGUGGUCAAGUUUUUCGGGGCACAGCUGCUCCAGGUGAAAUAUGUUCGGAAAUACCUGUGAAACAGGUGAGACUAACGAUA-AAUCGGGUAGCCACAAAUGGC-UUGGCAAAAAA
.....((((((((....((((((....))))))..(((.....((..(((...((((((.....))))))...(....)...-..)))..))..)))....)))-)))))...... ( -31.70)
>DroSec_CAF1 127994 113 + 1
UGCUGGUCAAGUUUUCCGGGGCACAUCUGCUCCGGGUGAAAUAUGUUCGAAAAUACCUGUGAAACAGGUGAGACCAACGAUA-AAGCGGGCAGCCAAAAAUGGG-UUGGCAAA-AA
((((((((......(((((((((....))))))))).................((((((.....)))))).))))..((...-...))))))(((((.......-)))))...-.. ( -39.00)
>DroSim_CAF1 130803 113 + 1
UGCUGGUCAAGCUUUUCGGGGCACAUCUGCUCCGGGUGAAAUAUGUUCGGAAAUACCUGUGAAACAGGUGAGACCAACGAUA-AAGCGGGCAGCCAAAAAUGGC-UUGGCAAA-AA
((((.(((..(((((((((((((....))))))))........((((.((...((((((.....))))))...))))))..)-)))).)))(((((....))))-).))))..-.. ( -38.10)
>DroEre_CAF1 134127 113 + 1
UGCCGGUCAAGUUUUUCGGCGCACAGAUGCUCCAGGUGAAAUAUGUUCGGAAAUACCUGUGAAACAGGUGAGGCCAAUGAUA-AAGCGGACAGUCGAA-AAGGAUUUGCCAGC-AA
(((.((.((((((((((((((((....)))(((....(((.....)))((...((((((.....))))))...)).......-....)))..))))))-)..)))))))).))-). ( -33.80)
>DroYak_CAF1 131434 115 + 1
UGCCGGUCAAGUUUUUCGGGGCACAGAUGCUCCAGGUGAAAUAUGUUCGGAAAUACCUGUGAAACAGGUGAGGCCAAUGACAAAAGCGAACAGCCAAAAAAGGUUUUGCCAAC-AA
....((((....(((((((((((....))))))....(((.....))))))))((((((.....)))))).))))..........(((((..(((......))))))))....-.. ( -31.20)
>consensus
UGCUGGUCAAGUUUUUCGGGGCACAGCUGCUCCAGGUGAAAUAUGUUCGGAAAUACCUGUGAAACAGGUGAGACCAACGAUA_AAGCGGGCAGCCAAAAAUGGC_UUGGCAAA_AA
.(((.(((.........((((((....)))))).((((((.....))).....((((((.....))))))..)))...)))...))).....(((((........)))))...... (-26.74 = -26.90 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:46 2006