Locus 5036

Sequence ID 2L_DroMel_CAF1
Location 14,439,096 – 14,439,189
Length 93
Max. P 0.693953
window8006

overview

Window 6

Location 14,439,096 – 14,439,189
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.77
Mean single sequence MFE -22.75
Consensus MFE -15.24
Energy contribution -15.02
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.39
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.693953
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14439096 93 + 22407834
CUGGCACUGCGGCACU--------CUGUUGCCAACCCAACGCA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
.((((.((((((((..--------....))))..(((((((..--.......))))..))))))).....((((((......))))))..........)))). ( -24.10)
>DroSec_CAF1 29342 88 + 1
CCGGCAUUGCGGCACU--------CUGUUGCCAACCCA-------ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
.((((.((((((((..--------....))))......-------..(((........))))))).....((((((......))))))..........)))). ( -22.80)
>DroSim_CAF1 31823 88 + 1
CCGGCACUGCGGCACU--------CUGUUGCCAACCCA-------ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
.((((.((((((((..--------....))))......-------..(((........))))))).....((((((......))))))..........)))). ( -25.30)
>DroEre_CAF1 31701 80 + 1
AUGGCACU----------------CUGUUG-----CCAACGCA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
.((((..(----------------((((((-----(....)))--)((((........))))))))....((((((......))))))..........)))). ( -19.00)
>DroYak_CAF1 31236 101 + 1
CCGGCACUGCGGCACUACGGCAGUCGGAUGGCAACCCAACACA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
(((..(((((.(.....).)))))))).((((...........--.((((........))))((...(((((((....)))))))...))........)))). ( -24.80)
>DroAna_CAF1 22110 74 + 1
-CGGC----------------------UUC-----CCAACGCCCCUCCCCAUAAUU-UGGGGCAGACAUUUUAAUUGCUUCAAAUUGAUGAUAAUUAAGCCGA
-((((----------------------((.-----.....(((((...........-.))))).......((((((......))))))........)))))). ( -20.50)
>consensus
CCGGCACUGCGGCACU________CUGUUGCCAACCCAACGCA__ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA
.((((.........................................((((........))))........((((((......))))))..........)))). (-15.24 = -15.02 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:13 2006