Locus 5013

Sequence ID	2L_DroMel_CAF1
Location	14,398,078 – 14,398,174
Length	96
Max. P	0.994190

overview

Window 9

Location	14,398,078 – 14,398,174
Length	96
Sequences	6
Columns	96
Reading direction	forward
Mean pairwise identity	97.22
Mean single sequence MFE	-22.93
Consensus MFE	-19.42
Energy contribution	-19.62
Covariance contribution	0.19
Combinations/Pair	1.05
Mean z-score	-1.57
Structure conservation index	0.85
SVM decision value	-0.06
SVM RNA-class probability	0.505384
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14398078 96 + 22407834
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00)
>DroSec_CAF1 19286 96 + 1
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00)
>DroSim_CAF1 18167 96 + 1
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00)
>DroEre_CAF1 19279 96 + 1
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00)
>DroYak_CAF1 19147 96 + 1
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00)
>DroAna_CAF1 33674 96 + 1
AACGCUGUCACAUUAACUGUCAACUACUGCAGAACUGACACUUGUCAUAUUGACAAGUGACAGCGUCAUUUGACUGUCAAACCCGGGCCAAGAGAG
..(((((((((.....((((........)))).........(((((.....))))))))))))))((.((((.(((.......)))..)))).)). ( -27.60)
>consensus
AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG
................((((......((((...........(((((.....)))))..(((((((.....)).)))))....))))....)))).. (-19.42 = -19.62 +   0.19)

alignment

secondary structure

dotplot

Window 0

Location	14,398,078 – 14,398,174
Length	96
Sequences	6
Columns	96
Reading direction	reverse
Mean pairwise identity	97.22
Mean single sequence MFE	-32.17
Consensus MFE	-29.62
Energy contribution	-29.57
Covariance contribution	-0.05
Combinations/Pair	1.10
Mean z-score	-1.96
Structure conservation index	0.92
SVM decision value	2.46
SVM RNA-class probability	0.994190
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14398078 96 - 22407834
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60)
>DroSec_CAF1 19286 96 - 1
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60)
>DroSim_CAF1 18167 96 - 1
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60)
>DroEre_CAF1 19279 96 - 1
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60)
>DroYak_CAF1 19147 96 - 1
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60)
>DroAna_CAF1 33674 96 - 1
CUCUCUUGGCCCGGGUUUGACAGUCAAAUGACGCUGUCACUUGUCAAUAUGACAAGUGUCAGUUCUGCAGUAGUUGACAGUUAAUGUGACAGCGUU
.....(((((...(......).)))))..(((((((((((((((((((.((((....))))(.....)....)))))))).....))))))))))) ( -30.00)
>consensus
CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU
(((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. (-29.62 = -29.57 +  -0.05)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:30 2006