Locus 5009

Sequence ID 2L_DroMel_CAF1
Location 14,392,978 – 14,393,078
Length 100
Max. P 0.622445
window7952

overview

Window 2

Location 14,392,978 – 14,393,078
Length 100
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.33
Mean single sequence MFE -29.57
Consensus MFE -24.44
Energy contribution -23.97
Covariance contribution -0.47
Combinations/Pair 1.17
Mean z-score -1.42
Structure conservation index 0.83
SVM decision value 0.18
SVM RNA-class probability 0.622445
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14392978 100 - 22407834
UCUCUUCUUUCACCC----------------AGCAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUCGGGGCGGAUACCACAAACCCCAAGCU
...............----------------...((((((((..........))))(.(((((((..((.......))...))))))).)((((..(......)...)))).)))) ( -27.20)
>DroPse_CAF1 22794 116 - 1
CCCUCUCUCUCCCCCUCUCUGUGUGUUUCGUUACAGCUGGACAACAAAAGCAGUCCAUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGAGCGGACACCACAAAUCCCAAGCU
.....(((((((....(.((((((((((.....(((.(((((..........))))))))((((.....)))))))))))))).).....)))).))).................. ( -30.60)
>DroEre_CAF1 14081 100 - 1
UUACUUCUUUCACCC----------------AGCAGCUGGACAACAAGAGCAGUCCGUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGGGCAGAUACCACAAACCCCAAACU
...............----------------(((.(((((((..........))))...))))))..((((((.........))))))((((((.............))))))... ( -27.12)
>DroYak_CAF1 13805 98 - 1
--UCUUCUUUCACCC----------------AGCAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAGACAUGCAGCGCCAUUGGGGCGGAUACCACAAACCCCAAGCU
--.............----------------(((....((((..........))))..(((((((..((.......))...)))))))((((((..(......)...))))))))) ( -27.40)
>DroAna_CAF1 29247 100 - 1
UCCUUUCUUCCGCCC----------------CACAGCUGGACAACAAAAGCAGCCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUCGGGGCGGACACCACAAACCCCAAGCU
........(((((((----------------(...((((...........))))..(.(((((((..((.......))...))))))).))))))))).................. ( -35.70)
>DroPer_CAF1 25003 114 - 1
CCCUCUCUCUCCCCCUCUCUG--UGUUUCGUUACAGCUGGACAACAAAAGCAGUCCAUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGAGCGGACACCACAAAUCCCAAGCU
.........(((.((...(((--((......)))))..)).........((..((((.(((((((..((.......))...))))))).))))))))).................. ( -29.40)
>consensus
UCCCUUCUUUCACCC________________AACAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUUGGGGCGGACACCACAAACCCCAAGCU
..................................((((((.........((..((((.(((((((..((.......))...))))))).))))))((...)).......)).)))) (-24.44 = -23.97 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:23 2006